Estefania Mancini
| Snapshot Date: 2019-04-15 17:01:12 -0400 (Mon, 15 Apr 2019) |
| URL: https://git.bioconductor.org/packages/ASpli |
| Branch: RELEASE_3_8 |
| Last Commit: a38e1df |
| Last Changed Date: 2019-01-04 13:13:08 -0400 (Fri, 04 Jan 2019) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-16 11:52:15 -0400 (Tue, 16 Apr 2019).
| Package 82/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| ASpli 1.8.1 Estefania Mancini
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | [ OK ] | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: ASpli |
| Version: 1.8.1 |
| Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:ASpli.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings ASpli_1.8.1.tar.gz |
| StartedAt: 2019-04-15 22:16:43 -0400 (Mon, 15 Apr 2019) |
| EndedAt: 2019-04-15 22:23:14 -0400 (Mon, 15 Apr 2019) |
| EllapsedTime: 390.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: ASpli.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:ASpli.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings ASpli_1.8.1.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.8-bioc/meat/ASpli.Rcheck’
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ASpli/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ASpli’ version ‘1.8.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ASpli’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
plotGenomicRegions 19.392 0.016 19.572
plotBins 10.964 0.004 11.026
ASpli-package 10.112 0.136 10.337
mergeBinDUAS-method 9.964 0.012 10.021
AsDiscover-methods 7.604 0.008 7.651
subset-methods 7.244 0.000 7.282
containsJunctions-function 6.292 0.004 6.331
junctionDUreport 6.224 0.004 6.242
filterDU-method 6.028 0.012 6.052
rds 5.584 0.020 5.609
DUreportBinSplice-method 5.552 0.008 5.585
DUreport 5.220 0.008 5.246
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
ASpli.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL ASpli ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.8-bioc/R/library’ * installing *source* package ‘ASpli’ ... ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (ASpli)
ASpli.Rcheck/ASpli-Ex.timings
| name | user | system | elapsed | |
| ASpli-package | 10.112 | 0.136 | 10.337 | |
| AsDiscover-methods | 7.604 | 0.008 | 7.651 | |
| DUreport | 5.220 | 0.008 | 5.246 | |
| DUreportBinSplice-method | 5.552 | 0.008 | 5.585 | |
| acc_AS | 0.020 | 0.004 | 0.069 | |
| acc_DU | 0.012 | 0.000 | 0.030 | |
| acc_counts | 0.020 | 0.000 | 0.045 | |
| acc_features | 0.216 | 0.000 | 0.218 | |
| binGenome | 3.356 | 0.004 | 3.389 | |
| containsJunctions-function | 6.292 | 0.004 | 6.331 | |
| example_data | 0.704 | 0.008 | 0.738 | |
| filterDU-method | 6.028 | 0.012 | 6.052 | |
| getConditions-function | 0.008 | 0.000 | 0.010 | |
| junctionDUreport | 6.224 | 0.004 | 6.242 | |
| loadBAM | 0.232 | 0.004 | 0.240 | |
| mergeBinDUAS-method | 9.964 | 0.012 | 10.021 | |
| plotBins | 10.964 | 0.004 | 11.026 | |
| plotGenomicRegions | 19.392 | 0.016 | 19.572 | |
| rds | 5.584 | 0.020 | 5.609 | |
| readCounts | 4.844 | 0.012 | 4.863 | |
| subset-methods | 7.244 | 0.000 | 7.282 | |