Johannes Waage
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/spliceR |
| Branch: RELEASE_3_7 |
| Last Commit: 203d7a2 |
| Last Changed Date: 2018-04-30 10:35:30 -0400 (Mon, 30 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:37:19 -0400 (Wed, 17 Oct 2018).
| Package 1414/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
Johannes Waage
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: spliceR |
| Version: 1.22.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/spliceR_1.22.0.tar.gz && rm -rf spliceR.buildbin-libdir && mkdir spliceR.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=spliceR.buildbin-libdir spliceR_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL spliceR_1.22.0.zip && rm spliceR_1.22.0.tar.gz spliceR_1.22.0.zip |
| StartedAt: 2018-10-16 20:34:15 -0400 (Tue, 16 Oct 2018) |
| EndedAt: 2018-10-16 20:35:23 -0400 (Tue, 16 Oct 2018) |
| EllapsedTime: 68.4 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/spliceR_1.22.0.tar.gz && rm -rf spliceR.buildbin-libdir && mkdir spliceR.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=spliceR.buildbin-libdir spliceR_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL spliceR_1.22.0.zip && rm spliceR_1.22.0.tar.gz spliceR_1.22.0.zip
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install for i386
* installing *source* package 'spliceR' ...
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c utils.c -o utils.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o spliceR.dll tmp.def utils.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/spliceR.buildbin-libdir/spliceR/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'spliceR'
finding HTML links ... done
CDSSet html
SpliceRList html
annotatePTC.R html
conditions html
dim html
generateGTF html
getCDS html
preSpliceRFilter html
prepareCuff html
prepareCuffExample html
spliceR html
spliceRPlot html
tools html
topIsoShift html
totalNumberOfAS html
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: Package 'spliceR' is deprecated and will be removed from Bioconductor
version 3.7 . Functionalities moved to IsoformSwitchAnalyzeR
In R CMD INSTALL
install for x64
* installing *source* package 'spliceR' ...
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c utils.c -o utils.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o spliceR.dll tmp.def utils.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/spliceR.buildbin-libdir/spliceR/libs/x64
** testing if installed package can be loaded
Warning: Package 'spliceR' is deprecated and will be removed from Bioconductor
version 3.7 . Functionalities moved to IsoformSwitchAnalyzeR
* MD5 sums
packaged installation of 'spliceR' as spliceR_1.22.0.zip
* DONE (spliceR)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'spliceR' successfully unpacked and MD5 sums checked
In R CMD INSTALL