Crispin Miller
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/simpleaffy |
| Branch: RELEASE_3_7 |
| Last Commit: a05d768 |
| Last Changed Date: 2018-04-30 10:34:58 -0400 (Mon, 30 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:32:00 -0400 (Wed, 17 Oct 2018).
| Package 1378/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| simpleaffy 2.56.0 Crispin Miller
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: simpleaffy |
| Version: 2.56.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/simpleaffy_2.56.0.tar.gz && rm -rf simpleaffy.buildbin-libdir && mkdir simpleaffy.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=simpleaffy.buildbin-libdir simpleaffy_2.56.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL simpleaffy_2.56.0.zip && rm simpleaffy_2.56.0.tar.gz simpleaffy_2.56.0.zip |
| StartedAt: 2018-10-16 19:41:08 -0400 (Tue, 16 Oct 2018) |
| EndedAt: 2018-10-16 19:42:16 -0400 (Tue, 16 Oct 2018) |
| EllapsedTime: 67.8 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/simpleaffy_2.56.0.tar.gz && rm -rf simpleaffy.buildbin-libdir && mkdir simpleaffy.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=simpleaffy.buildbin-libdir simpleaffy_2.56.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL simpleaffy_2.56.0.zip && rm simpleaffy_2.56.0.tar.gz simpleaffy_2.56.0.zip
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install for i386
* installing *source* package 'simpleaffy' ...
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c simpleaffy.c -o simpleaffy.o
simpleaffy.c: In function 'bgmas':
simpleaffy.c:440:30: warning: passing argument 1 of 'REprintf' from incompatible pointer type
if(gn >= ngrid) REprintf(stderr,"Really ouch! %d %d\n",gn,ends[gn]);
^
In file included from C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include/R.h:88:0,
from simpleaffy.c:5:
C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include/R_ext/Print.h:43:6: note: expected 'const char *' but argument is of type 'struct FILE *'
void REprintf(const char *, ...);
^
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o simpleaffy.dll tmp.def simpleaffy.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/simpleaffy.buildbin-libdir/simpleaffy/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'simpleaffy'
finding HTML links ... done
PairComp-class html
QCStats-class html
all.present html
all.present.in.group html
bg.correct.sa html
call.exprs html
detection.p.val html
get.annotation html
get.array.indices html
get.array.subset html
get.array.subset.affy html
get.fold.change.and.t.test html
hmap.colors html
hmap.eset html
hmap.pc html
journalpng html
justMAS html
pairwise.comparison html
pairwise.filter html
plot.pairwise.comparison html
plot.qc.stats html
qc html
qc.affy html
qc.get.alpha1 html
qc.get.array html
qc.get.probes html
qc.get.ratios html
qc.get.spikes html
qc.have.params html
qc.ok html
qc.read.file html
qc.stats html
read.affy html
read.affy.mixed html
setQCEnvironment html
simpleaffy-deprecated html
standard.pearson html
trad.scatter.plot html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'simpleaffy' ...
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c simpleaffy.c -o simpleaffy.o
simpleaffy.c: In function 'bgmas':
simpleaffy.c:440:30: warning: passing argument 1 of 'REprintf' from incompatible pointer type
if(gn >= ngrid) REprintf(stderr,"Really ouch! %d %d\n",gn,ends[gn]);
^
In file included from C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include/R.h:88:0,
from simpleaffy.c:5:
C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include/R_ext/Print.h:43:6: note: expected 'const char *' but argument is of type 'struct FILE *'
void REprintf(const char *, ...);
^
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o simpleaffy.dll tmp.def simpleaffy.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/simpleaffy.buildbin-libdir/simpleaffy/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'simpleaffy' as simpleaffy_2.56.0.zip
* DONE (simpleaffy)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'simpleaffy' successfully unpacked and MD5 sums checked
In R CMD INSTALL