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INSTALL report for manta on tokay2

This page was generated on 2018-10-17 08:36:00 -0400 (Wed, 17 Oct 2018).

Package 824/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
manta 1.26.0
Chris Berthiaume , Adrian Marchetti
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/manta
Branch: RELEASE_3_7
Last Commit: ff327c8
Last Changed Date: 2018-04-30 10:35:23 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: manta
Version: 1.26.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/manta_1.26.0.tar.gz && rm -rf manta.buildbin-libdir && mkdir manta.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=manta.buildbin-libdir manta_1.26.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL manta_1.26.0.zip && rm manta_1.26.0.tar.gz manta_1.26.0.zip
StartedAt: 2018-10-16 20:30:47 -0400 (Tue, 16 Oct 2018)
EndedAt: 2018-10-16 20:31:34 -0400 (Tue, 16 Oct 2018)
EllapsedTime: 46.3 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/manta_1.26.0.tar.gz && rm -rf manta.buildbin-libdir && mkdir manta.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=manta.buildbin-libdir manta_1.26.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL manta_1.26.0.zip && rm manta_1.26.0.tar.gz manta_1.26.0.zip
###
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install for i386

* installing *source* package 'manta' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'manta'
    finding HTML links ... done
    cmdArgsToVariables                      html  
    collapseRepliCounts                     html  
    compbiasPlot                            html  
    compbiasTest                            html  
    generateWeights                         html  
    in2manta                                html  
    makeSampleDF                            html  
    manta-class                             html  
    manta                                   html  
    meta2counts                             html  
    metataxa2subcounts                      html  
    nf2nr                                   html  
    normfact2absTMM                         html  
    nr                                      html  
    outliers                                html  
    plot.manta                              html  
    pplacer2manta                           html  
    readSeastar                             html  
    seastar2counts                          html  
    summary.manta                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'manta' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'manta' as manta_1.26.0.zip
* DONE (manta)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'manta' successfully unpacked and MD5 sums checked
In R CMD INSTALL