Greg Imholte
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/iBMQ |
| Branch: RELEASE_3_7 |
| Last Commit: c47a000 |
| Last Changed Date: 2018-04-30 10:35:28 -0400 (Mon, 30 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:36:48 -0400 (Wed, 17 Oct 2018).
| Package 707/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| iBMQ 1.20.0 Greg Imholte
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | ...NOT SUPPORTED... | ||||||||||
| Package: iBMQ |
| Version: 1.20.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/iBMQ_1.20.0.tar.gz && rm -rf iBMQ.buildbin-libdir && mkdir iBMQ.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=iBMQ.buildbin-libdir iBMQ_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL iBMQ_1.20.0.zip && rm iBMQ_1.20.0.tar.gz iBMQ_1.20.0.zip |
| StartedAt: 2018-10-16 18:58:40 -0400 (Tue, 16 Oct 2018) |
| EndedAt: 2018-10-16 18:59:28 -0400 (Tue, 16 Oct 2018) |
| EllapsedTime: 47.8 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/iBMQ_1.20.0.tar.gz && rm -rf iBMQ.buildbin-libdir && mkdir iBMQ.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=iBMQ.buildbin-libdir iBMQ_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL iBMQ_1.20.0.zip && rm iBMQ_1.20.0.tar.gz iBMQ_1.20.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 3798k 100 3798k 0 0 38.6M 0 --:--:-- --:--:-- --:--:-- 41.6M
install for i386
* installing *source* package 'iBMQ' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I/src/include -I/i386/include -fopenmp -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c ARS.c -o ARS.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I/src/include -I/i386/include -fopenmp -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c RngStream.c -o RngStream.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I/src/include -I/i386/include -fopenmp -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c iBMQ_common.c -o iBMQ_common.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I/src/include -I/i386/include -fopenmp -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c main_parallel_sparse.c -o main_parallel_sparse.o
main_parallel_sparse.c: In function 'iBMQ_main':
main_parallel_sparse.c:289:3: warning: 'Cfile' may be used uninitialized in this function [-Wmaybe-uninitialized]
fclose(Cfile);
^
main_parallel_sparse.c:288:3: warning: 'Sig2file' may be used uninitialized in this function [-Wmaybe-uninitialized]
fclose(Sig2file);
^
main_parallel_sparse.c:287:3: warning: 'Mufile' may be used uninitialized in this function [-Wmaybe-uninitialized]
fclose(Mufile);
^
main_parallel_sparse.c:285:3: warning: 'Bfile' may be used uninitialized in this function [-Wmaybe-uninitialized]
fclose(Bfile);
^
main_parallel_sparse.c:284:3: warning: 'Afile' may be used uninitialized in this function [-Wmaybe-uninitialized]
fclose(Afile);
^
main_parallel_sparse.c:286:3: warning: 'Pfile' may be used uninitialized in this function [-Wmaybe-uninitialized]
fclose(Pfile);
^
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I/src/include -I/i386/include -fopenmp -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c main_parallel_sparse_constC.c -o main_parallel_sparse_constC.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I/src/include -I/i386/include -fopenmp -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c norm_gamma_generation.c -o norm_gamma_generation.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I/src/include -I/i386/include -fopenmp -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c sparse.c -o sparse.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o iBMQ.dll tmp.def ARS.o RngStream.o iBMQ_common.o main_parallel_sparse.o main_parallel_sparse_constC.o norm_gamma_generation.o sparse.o -L/i386/lib -lgsl -lgslcblas -lm -fopenmp -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/iBMQ.buildbin-libdir/iBMQ/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'iBMQ'
finding HTML links ... done
PPA.liver html
calculateThreshold html
eqtlClassifier html
eqtlFinder html
eqtlMcmc html
gene html
genepos html
genotype.liver html
hotspotFinder html
iBMQ-package html
map.liver html
phenotype.liver html
probe.liver html
snp html
snppos html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'iBMQ' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I/src/include -I/x64/include -fopenmp -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c ARS.c -o ARS.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I/src/include -I/x64/include -fopenmp -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c RngStream.c -o RngStream.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I/src/include -I/x64/include -fopenmp -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c iBMQ_common.c -o iBMQ_common.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I/src/include -I/x64/include -fopenmp -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c main_parallel_sparse.c -o main_parallel_sparse.o
main_parallel_sparse.c: In function 'iBMQ_main':
main_parallel_sparse.c:289:3: warning: 'Cfile' may be used uninitialized in this function [-Wmaybe-uninitialized]
fclose(Cfile);
^
main_parallel_sparse.c:288:3: warning: 'Sig2file' may be used uninitialized in this function [-Wmaybe-uninitialized]
fclose(Sig2file);
^
main_parallel_sparse.c:287:3: warning: 'Mufile' may be used uninitialized in this function [-Wmaybe-uninitialized]
fclose(Mufile);
^
main_parallel_sparse.c:285:3: warning: 'Bfile' may be used uninitialized in this function [-Wmaybe-uninitialized]
fclose(Bfile);
^
main_parallel_sparse.c:284:3: warning: 'Afile' may be used uninitialized in this function [-Wmaybe-uninitialized]
fclose(Afile);
^
main_parallel_sparse.c:286:3: warning: 'Pfile' may be used uninitialized in this function [-Wmaybe-uninitialized]
fclose(Pfile);
^
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I/src/include -I/x64/include -fopenmp -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c main_parallel_sparse_constC.c -o main_parallel_sparse_constC.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I/src/include -I/x64/include -fopenmp -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c norm_gamma_generation.c -o norm_gamma_generation.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I/src/include -I/x64/include -fopenmp -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c sparse.c -o sparse.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o iBMQ.dll tmp.def ARS.o RngStream.o iBMQ_common.o main_parallel_sparse.o main_parallel_sparse_constC.o norm_gamma_generation.o sparse.o -L/x64/lib -lgsl -lgslcblas -lm -fopenmp -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/iBMQ.buildbin-libdir/iBMQ/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'iBMQ' as iBMQ_1.20.0.zip
* DONE (iBMQ)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'iBMQ' successfully unpacked and MD5 sums checked
In R CMD INSTALL