Package: gaggle

Version: 1.48.0

Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/gaggle_1.48.0.tar.gz && rm -rf gaggle.buildbin-libdir && mkdir gaggle.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=gaggle.buildbin-libdir gaggle_1.48.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL gaggle_1.48.0.zip && rm gaggle_1.48.0.tar.gz gaggle_1.48.0.zip

StartedAt: 2018-10-16 18:39:49 -0400 (Tue, 16 Oct 2018)

EndedAt: 2018-10-16 18:42:05 -0400 (Tue, 16 Oct 2018)

EllapsedTime: 135.5 seconds

RetCode: 0

Status:  OK

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/gaggle_1.48.0.tar.gz && rm -rf gaggle.buildbin-libdir && mkdir gaggle.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=gaggle.buildbin-libdir gaggle_1.48.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL gaggle_1.48.0.zip && rm gaggle_1.48.0.tar.gz gaggle_1.48.0.zip
###
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install for i386

* installing *source* package 'gaggle' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'gaggle'
    finding HTML links ... done
    broadcast                               html  
    connectToGaggle                         html  
    disconnectFromGaggle                    html  
    gaggleInit                              html  
    geese                                   html  
    getCluster                              html  
    getJavaClassName                        html  
    getMatrix                               html  
    getNameList                             html  
    getNetwork                              html  
    getSpecies                              html  
    getTargetGoose                          html  
    getTuple                                html  
    hideGoose                               html  
    newTuple                                html  
    setSpecies                              html  
    setTargetGoose                          html  
    showGoose                               html  
    testGagglePackage                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded

onLoad -- libname: C:/Users/biocbuild/bbs-3.7-bioc/meat/gaggle.buildbin-libdir pkgname: gaggle 
path to jar: C:/Users/biocbuild/bbs-3.7-bioc/meat/gaggle.buildbin-libdir/gaggle/jars/gaggleRShell.jar 
      script:  gaggle.R $Revision: 4499 $   $Date: 2010-08-10 17:15:03 -0700 (Tue, 10 Aug 2010) $ 
  os version:  Windows Server 2012 R2 
 jvm version:  1.8.0_111 

   You are using the wrong version of Java.
   Please see http://gaggle.systemsbiology.org/docs/html/java

In R CMD INSTALL

install for x64

* installing *source* package 'gaggle' ...
** testing if installed package can be loaded

onLoad -- libname: C:/Users/biocbuild/bbs-3.7-bioc/meat/gaggle.buildbin-libdir pkgname: gaggle 
path to jar: C:/Users/biocbuild/bbs-3.7-bioc/meat/gaggle.buildbin-libdir/gaggle/jars/gaggleRShell.jar 
      script:  gaggle.R $Revision: 4499 $   $Date: 2010-08-10 17:15:03 -0700 (Tue, 10 Aug 2010) $ 
  os version:  Windows Server 2012 R2 
 jvm version:  1.8.0_111 

   You are using the wrong version of Java.
   Please see http://gaggle.systemsbiology.org/docs/html/java

* MD5 sums
packaged installation of 'gaggle' as gaggle_1.48.0.zip
* DONE (gaggle)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'gaggle' successfully unpacked and MD5 sums checked
In R CMD INSTALL