Josef Spidlen
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/flowQB |
| Branch: RELEASE_3_7 |
| Last Commit: 9b248f1 |
| Last Changed Date: 2018-04-30 10:35:25 -0400 (Mon, 30 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:50:32 -0400 (Wed, 17 Oct 2018).
| Package 515/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| flowQB 2.8.0 Josef Spidlen
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK | |
| Package: flowQB |
| Version: 2.8.0 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:flowQB.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings flowQB_2.8.0.tar.gz |
| StartedAt: 2018-10-16 21:25:01 -0400 (Tue, 16 Oct 2018) |
| EndedAt: 2018-10-16 21:38:18 -0400 (Tue, 16 Oct 2018) |
| EllapsedTime: 796.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: flowQB.Rcheck |
| Warnings: 0 |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:flowQB.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings flowQB_2.8.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.7-bioc/meat/flowQB.Rcheck’
* using R version 3.5.1 Patched (2018-07-12 r74967)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘flowQB/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘flowQB’ version ‘2.8.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘flowQB’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
fit_beads 317.571 11.998 331.514
fit_led 14.407 2.320 16.460
qb_from_fits 12.826 2.082 14.870
calc_mean_sd_197 7.628 0.839 6.708
calc_mean_sd_capture_all 4.994 0.646 5.189
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
flowQB.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL flowQB ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.5/Resources/library’ * installing *source* package ‘flowQB’ ... ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (flowQB)
flowQB.Rcheck/tests/runTests.Rout
R version 3.5.1 Patched (2018-07-12 r74967) -- "Feather Spray"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin15.6.0 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage("flowQB")
RUNIT TEST PROTOCOL -- Tue Oct 16 21:38:13 2018
***********************************************
Number of test functions: 19
Number of errors: 0
Number of failures: 0
1 Test Suite :
flowQB RUnit Tests - 19 test functions, 0 errors, 0 failures
Number of test functions: 19
Number of errors: 0
Number of failures: 0
Warning messages:
1: Quick-TRANSfer stage steps exceeded maximum (= 3762700)
2: Quick-TRANSfer stage steps exceeded maximum (= 3762700)
3: Quick-TRANSfer stage steps exceeded maximum (= 3762700)
4: Quick-TRANSfer stage steps exceeded maximum (= 3762700)
5: Quick-TRANSfer stage steps exceeded maximum (= 3709000)
>
> proc.time()
user system elapsed
322.696 16.303 336.891
flowQB.Rcheck/flowQB-Ex.timings
| name | user | system | elapsed | |
| calc_mean_sd_197 | 7.628 | 0.839 | 6.708 | |
| calc_mean_sd_background | 2.679 | 0.367 | 2.142 | |
| calc_mean_sd_capture | 0.460 | 0.047 | 0.509 | |
| calc_mean_sd_capture_all | 4.994 | 0.646 | 5.189 | |
| calc_mean_sd_duke | 2.343 | 0.279 | 2.126 | |
| find_peak | 0.001 | 0.001 | 0.002 | |
| fit_beads | 317.571 | 11.998 | 331.514 | |
| fit_led | 14.407 | 2.320 | 16.460 | |
| fitted_ellipse_gate | 0.824 | 0.241 | 1.064 | |
| get_results_for_dyes | 2.433 | 0.339 | 2.476 | |
| peak_gate-methods | 0.786 | 0.215 | 1.001 | |
| pick_parameters-methods | 0.703 | 0.204 | 0.916 | |
| qb_from_fits | 12.826 | 2.082 | 14.870 | |
| split_in_two-methods | 0.636 | 0.157 | 0.796 | |