Julian Gehring
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/TSSi |
| Branch: RELEASE_3_7 |
| Last Commit: 45a1d1b |
| Last Changed Date: 2018-04-30 10:35:20 -0400 (Mon, 30 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:35:35 -0400 (Wed, 17 Oct 2018).
| Package 1514/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| TSSi 1.26.0 Julian Gehring
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: TSSi |
| Version: 1.26.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/TSSi_1.26.0.tar.gz && rm -rf TSSi.buildbin-libdir && mkdir TSSi.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TSSi.buildbin-libdir TSSi_1.26.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL TSSi_1.26.0.zip && rm TSSi_1.26.0.tar.gz TSSi_1.26.0.zip |
| StartedAt: 2018-10-16 20:23:22 -0400 (Tue, 16 Oct 2018) |
| EndedAt: 2018-10-16 20:24:11 -0400 (Tue, 16 Oct 2018) |
| EllapsedTime: 49.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/TSSi_1.26.0.tar.gz && rm -rf TSSi.buildbin-libdir && mkdir TSSi.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TSSi.buildbin-libdir TSSi_1.26.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL TSSi_1.26.0.zip && rm TSSi_1.26.0.tar.gz TSSi_1.26.0.zip
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install for i386
* installing *source* package 'TSSi' ...
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c assess.c -o assess.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c init.c -o init.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o TSSi.dll tmp.def assess.o init.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/TSSi.buildbin-libdir/TSSi/libs/i386
** R
** data
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'segments' in package 'TSSi'
** help
*** installing help indices
converting help for package 'TSSi'
finding HTML links ... done
TSSi-package html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpkjYB0k/R.INSTALL25683bfd43d7/TSSi/man/TSSi-package.Rd:54: file link 'segmentizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpkjYB0k/R.INSTALL25683bfd43d7/TSSi/man/TSSi-package.Rd:54: file link 'normalizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpkjYB0k/R.INSTALL25683bfd43d7/TSSi/man/TSSi-package.Rd:55: file link 'identifyStartSites' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpkjYB0k/R.INSTALL25683bfd43d7/TSSi/man/TSSi-package.Rd:66: file link 'physcoCounts' in package 'TSSi' does not exist and so has been treated as a topic
TssData-class html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpkjYB0k/R.INSTALL25683bfd43d7/TSSi/man/TssData-class.Rd:144: file link 'segmentizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpkjYB0k/R.INSTALL25683bfd43d7/TSSi/man/TssData-class.Rd:144: file link 'normalizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpkjYB0k/R.INSTALL25683bfd43d7/TSSi/man/TssData-class.Rd:145: file link 'identifyStartSites' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpkjYB0k/R.INSTALL25683bfd43d7/TSSi/man/TssData-class.Rd:152: file link 'physcoCounts' in package 'TSSi' does not exist and so has been treated as a topic
TssNorm-class html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpkjYB0k/R.INSTALL25683bfd43d7/TSSi/man/TssNorm-class.Rd:74: file link 'segmentizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpkjYB0k/R.INSTALL25683bfd43d7/TSSi/man/TssNorm-class.Rd:74: file link 'normalizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpkjYB0k/R.INSTALL25683bfd43d7/TSSi/man/TssNorm-class.Rd:75: file link 'identifyStartSites' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpkjYB0k/R.INSTALL25683bfd43d7/TSSi/man/TssNorm-class.Rd:82: file link 'physcoCounts' in package 'TSSi' does not exist and so has been treated as a topic
TssResult-class html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpkjYB0k/R.INSTALL25683bfd43d7/TSSi/man/TssResult-class.Rd:86: file link 'segmentizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpkjYB0k/R.INSTALL25683bfd43d7/TSSi/man/TssResult-class.Rd:86: file link 'normalizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpkjYB0k/R.INSTALL25683bfd43d7/TSSi/man/TssResult-class.Rd:87: file link 'identifyStartSites' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpkjYB0k/R.INSTALL25683bfd43d7/TSSi/man/TssResult-class.Rd:94: file link 'physcoCounts' in package 'TSSi' does not exist and so has been treated as a topic
asRangedData-methods html
finding level-2 HTML links ... done
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpkjYB0k/R.INSTALL25683bfd43d7/TSSi/man/asRangedData-methods.Rd:89: file link 'segmentizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpkjYB0k/R.INSTALL25683bfd43d7/TSSi/man/asRangedData-methods.Rd:89: file link 'normalizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpkjYB0k/R.INSTALL25683bfd43d7/TSSi/man/asRangedData-methods.Rd:90: file link 'identifyStartSites' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpkjYB0k/R.INSTALL25683bfd43d7/TSSi/man/asRangedData-methods.Rd:97: file link 'physcoCounts' in package 'TSSi' does not exist and so has been treated as a topic
get-methods html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpkjYB0k/R.INSTALL25683bfd43d7/TSSi/man/get-methods.Rd:160: file link 'segmentizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpkjYB0k/R.INSTALL25683bfd43d7/TSSi/man/get-methods.Rd:160: file link 'normalizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpkjYB0k/R.INSTALL25683bfd43d7/TSSi/man/get-methods.Rd:161: file link 'identifyStartSites' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpkjYB0k/R.INSTALL25683bfd43d7/TSSi/man/get-methods.Rd:168: file link 'physcoCounts' in package 'TSSi' does not exist and so has been treated as a topic
identify-methods html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpkjYB0k/R.INSTALL25683bfd43d7/TSSi/man/identify-methods.Rd:101: file link 'segmentizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpkjYB0k/R.INSTALL25683bfd43d7/TSSi/man/identify-methods.Rd:101: file link 'normalizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpkjYB0k/R.INSTALL25683bfd43d7/TSSi/man/identify-methods.Rd:102: file link 'identifyStartSites' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpkjYB0k/R.INSTALL25683bfd43d7/TSSi/man/identify-methods.Rd:109: file link 'physcoCounts' in package 'TSSi' does not exist and so has been treated as a topic
normalize-methods html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpkjYB0k/R.INSTALL25683bfd43d7/TSSi/man/normalize-methods.Rd:112: file link 'segmentizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpkjYB0k/R.INSTALL25683bfd43d7/TSSi/man/normalize-methods.Rd:112: file link 'normalizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpkjYB0k/R.INSTALL25683bfd43d7/TSSi/man/normalize-methods.Rd:113: file link 'identifyStartSites' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpkjYB0k/R.INSTALL25683bfd43d7/TSSi/man/normalize-methods.Rd:120: file link 'physcoCounts' in package 'TSSi' does not exist and so has been treated as a topic
physcoCounts-data html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpkjYB0k/R.INSTALL25683bfd43d7/TSSi/man/physcoCounts-data.Rd:49: file link 'segmentizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpkjYB0k/R.INSTALL25683bfd43d7/TSSi/man/physcoCounts-data.Rd:49: file link 'normalizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpkjYB0k/R.INSTALL25683bfd43d7/TSSi/man/physcoCounts-data.Rd:50: file link 'identifyStartSites' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpkjYB0k/R.INSTALL25683bfd43d7/TSSi/man/physcoCounts-data.Rd:57: file link 'physcoCounts' in package 'TSSi' does not exist and so has been treated as a topic
plot-methods html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpkjYB0k/R.INSTALL25683bfd43d7/TSSi/man/plot-methods.Rd:154: file link 'segmentizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpkjYB0k/R.INSTALL25683bfd43d7/TSSi/man/plot-methods.Rd:154: file link 'normalizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpkjYB0k/R.INSTALL25683bfd43d7/TSSi/man/plot-methods.Rd:155: file link 'identifyStartSites' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpkjYB0k/R.INSTALL25683bfd43d7/TSSi/man/plot-methods.Rd:162: file link 'physcoCounts' in package 'TSSi' does not exist and so has been treated as a topic
segmentize-methods html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpkjYB0k/R.INSTALL25683bfd43d7/TSSi/man/segmentize-methods.Rd:91: file link 'segmentizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpkjYB0k/R.INSTALL25683bfd43d7/TSSi/man/segmentize-methods.Rd:91: file link 'normalizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpkjYB0k/R.INSTALL25683bfd43d7/TSSi/man/segmentize-methods.Rd:92: file link 'identifyStartSites' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpkjYB0k/R.INSTALL25683bfd43d7/TSSi/man/segmentize-methods.Rd:99: file link 'physcoCounts' in package 'TSSi' does not exist and so has been treated as a topic
subtract-functions html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpkjYB0k/R.INSTALL25683bfd43d7/TSSi/man/subtract-functions.Rd:50: file link 'segmentizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpkjYB0k/R.INSTALL25683bfd43d7/TSSi/man/subtract-functions.Rd:50: file link 'normalizeCounts' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpkjYB0k/R.INSTALL25683bfd43d7/TSSi/man/subtract-functions.Rd:51: file link 'identifyStartSites' in package 'TSSi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpkjYB0k/R.INSTALL25683bfd43d7/TSSi/man/subtract-functions.Rd:58: file link 'physcoCounts' in package 'TSSi' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'TSSi' ...
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c assess.c -o assess.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c init.c -o init.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o TSSi.dll tmp.def assess.o init.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/TSSi.buildbin-libdir/TSSi/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'TSSi' as TSSi_1.26.0.zip
* DONE (TSSi)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'TSSi' successfully unpacked and MD5 sums checked
In R CMD INSTALL