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INSTALL report for SomaticSignatures on tokay2

This page was generated on 2018-10-17 08:38:08 -0400 (Wed, 17 Oct 2018).

Package 1401/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SomaticSignatures 2.16.0
Julian Gehring
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/SomaticSignatures
Branch: RELEASE_3_7
Last Commit: 4ae348d
Last Changed Date: 2018-04-30 10:35:32 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: SomaticSignatures
Version: 2.16.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/SomaticSignatures_2.16.0.tar.gz && rm -rf SomaticSignatures.buildbin-libdir && mkdir SomaticSignatures.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SomaticSignatures.buildbin-libdir SomaticSignatures_2.16.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL SomaticSignatures_2.16.0.zip && rm SomaticSignatures_2.16.0.tar.gz SomaticSignatures_2.16.0.zip
StartedAt: 2018-10-16 20:32:01 -0400 (Tue, 16 Oct 2018)
EndedAt: 2018-10-16 20:33:35 -0400 (Tue, 16 Oct 2018)
EllapsedTime: 93.5 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/SomaticSignatures_2.16.0.tar.gz && rm -rf SomaticSignatures.buildbin-libdir && mkdir SomaticSignatures.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SomaticSignatures.buildbin-libdir SomaticSignatures_2.16.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL SomaticSignatures_2.16.0.zip && rm SomaticSignatures_2.16.0.tar.gz SomaticSignatures_2.16.0.zip
###
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100  127k  100  127k    0     0  1790k      0 --:--:-- --:--:-- --:--:-- 1985k

install for i386

* installing *source* package 'SomaticSignatures' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'SomaticSignatures'
    finding HTML links ... done
    MutationalSignatures-class              html  
    SomaticSignatures-package               html  
    cluster-spetrum                         html  
    decomposition-functions                 html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpK6JDXZ/R.INSTALL25043c352774/SomaticSignatures/man/decomposition-functions.Rd:75: file link 'NMF' in package 'NMF' does not exist and so has been treated as a topic
    gc                                      html  
    granges-utils                           html  
    finding level-2 HTML links ... done

    hs-chrs                                 html  
    kmers-data                              html  
    kmers                                   html  
    motif-functions                         html  
    mutation-context                        html  
    mutation-distribution                   html  
    mutational-normalization                html  
    mutational-plots                        html  
    mutational-signatures                   html  
    mutect                                  html  
    number-signatures                       html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpK6JDXZ/R.INSTALL25043c352774/SomaticSignatures/man/number-signatures.Rd:98: file link 'evar' in package 'NMF' does not exist and so has been treated as a topic
    sca-data                                html  
    signature-plot-functions                html  
    signatures21-data                       html  
    utils                                   html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'SomaticSignatures' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SomaticSignatures' as SomaticSignatures_2.16.0.zip
* DONE (SomaticSignatures)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'SomaticSignatures' successfully unpacked and MD5 sums checked
In R CMD INSTALL