Minoo Ashtiani
| Snapshot Date: 2018-07-24 16:45:59 -0400 (Tue, 24 Jul 2018) |
| URL: https://git.bioconductor.org/packages/IMMAN |
| Branch: RELEASE_3_7 |
| Last Commit: 79600c9 |
| Last Changed Date: 2018-04-30 10:35:50 -0400 (Mon, 30 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-07-25 10:25:25 -0400 (Wed, 25 Jul 2018).
| Package 726/1560 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| IMMAN 1.0.0 Minoo Ashtiani
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: IMMAN |
| Version: 1.0.0 |
| Command: C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:IMMAN.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings IMMAN_1.0.0.tar.gz |
| StartedAt: 2018-07-25 02:36:37 -0400 (Wed, 25 Jul 2018) |
| EndedAt: 2018-07-25 02:46:21 -0400 (Wed, 25 Jul 2018) |
| EllapsedTime: 583.9 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: IMMAN.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:IMMAN.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings IMMAN_1.0.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'C:/Users/biocbuild/bbs-3.7-bioc/meat/IMMAN.Rcheck'
* using R version 3.5.1 RC (2018-06-24 r74929)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'IMMAN/DESCRIPTION' ... OK
* this is package 'IMMAN' version '1.0.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'IMMAN' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
IMMAN: no visible binding for global variable 'tem'
IMMAN : <anonymous>: no visible binding for global variable 'tem'
Undefined global functions or variables:
tem
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
IMMAN 111.65 2.88 127
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
IMMAN 123.41 2.41 137.72
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'testthat.R'
OK
** running tests for arch 'x64' ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'C:/Users/biocbuild/bbs-3.7-bioc/meat/IMMAN.Rcheck/00check.log'
for details.
IMMAN.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/IMMAN_1.0.0.tar.gz && rm -rf IMMAN.buildbin-libdir && mkdir IMMAN.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=IMMAN.buildbin-libdir IMMAN_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL IMMAN_1.0.0.zip && rm IMMAN_1.0.0.tar.gz IMMAN_1.0.0.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
0 14069 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 14069 100 14069 0 0 239k 0 --:--:-- --:--:-- --:--:-- 264k
install for i386
* installing *source* package 'IMMAN' ...
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'IMMAN'
finding HTML links ... done
Celegance html
FruitFly html
H.sapiens html
IMMAN html
R.norvegicus html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'IMMAN' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'IMMAN' as IMMAN_1.0.0.zip
* DONE (IMMAN)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'IMMAN' successfully unpacked and MD5 sums checked
In R CMD INSTALL
|
IMMAN.Rcheck/tests_i386/testthat.Rout
R version 3.5.1 RC (2018-06-24 r74929) -- "Feather Spray"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(IMMAN)
>
> test_check("IMMAN")
trying URL 'http://string.uzh.ch/permanent/string/10/protein_aliases/6239__protein_aliases_tf.tsv.gz'
Content type 'application/x-gzip' length 3866324 bytes (3.7 MB)
==================================================
downloaded 3.7 MB
trying URL 'http://string.uzh.ch/permanent/string/10/proteins/6239__proteins.tsv.gz'
Content type 'application/x-gzip' length 792419 bytes (773 KB)
==================================================
downloaded 773 KB
trying URL 'http://string.uzh.ch/permanent/string/10/protein_aliases/7227__protein_aliases_tf.tsv.gz'
Content type 'application/x-gzip' length 4062637 bytes (3.9 MB)
==================================================
downloaded 3.9 MB
trying URL 'http://string.uzh.ch/permanent/string/10/proteins/7227__proteins.tsv.gz'
Content type 'application/x-gzip' length 648541 bytes (633 KB)
==================================================
downloaded 633 KB
trying URL 'http://string.uzh.ch/permanent/string/10/protein_links/6239__protein_links.tsv.gz'
Content type 'application/x-gzip' length 26272827 bytes (25.1 MB)
==================================================
downloaded 25.1 MB
trying URL 'http://string.uzh.ch/permanent/string/10/protein_links/7227__protein_links.tsv.gz'
Content type 'application/x-gzip' length 18188738 bytes (17.3 MB)
==================================================
downloaded 17.3 MB
== testthat results ===========================================================
OK: 2 SKIPPED: 0 FAILED: 0
>
> proc.time()
user system elapsed
81.17 2.75 92.92
|
IMMAN.Rcheck/tests_x64/testthat.Rout
R version 3.5.1 RC (2018-06-24 r74929) -- "Feather Spray"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(IMMAN)
>
> test_check("IMMAN")
trying URL 'http://string.uzh.ch/permanent/string/10/protein_aliases/6239__protein_aliases_tf.tsv.gz'
Content type 'application/x-gzip' length 3866324 bytes (3.7 MB)
==================================================
downloaded 3.7 MB
trying URL 'http://string.uzh.ch/permanent/string/10/proteins/6239__proteins.tsv.gz'
Content type 'application/x-gzip' length 792419 bytes (773 KB)
==================================================
downloaded 773 KB
trying URL 'http://string.uzh.ch/permanent/string/10/protein_aliases/7227__protein_aliases_tf.tsv.gz'
Content type 'application/x-gzip' length 4062637 bytes (3.9 MB)
==================================================
downloaded 3.9 MB
trying URL 'http://string.uzh.ch/permanent/string/10/proteins/7227__proteins.tsv.gz'
Content type 'application/x-gzip' length 648541 bytes (633 KB)
==================================================
downloaded 633 KB
trying URL 'http://string.uzh.ch/permanent/string/10/protein_links/6239__protein_links.tsv.gz'
Content type 'application/x-gzip' length 26272827 bytes (25.1 MB)
==================================================
downloaded 25.1 MB
trying URL 'http://string.uzh.ch/permanent/string/10/protein_links/7227__protein_links.tsv.gz'
Content type 'application/x-gzip' length 18188738 bytes (17.3 MB)
==================================================
downloaded 17.3 MB
== testthat results ===========================================================
OK: 2 SKIPPED: 0 FAILED: 0
>
> proc.time()
user system elapsed
94.21 2.81 105.64
|
|
IMMAN.Rcheck/examples_i386/IMMAN-Ex.timings
|
IMMAN.Rcheck/examples_x64/IMMAN-Ex.timings
|