Back to Multiple platform build/check report for BioC 3.7
ABCDEF[G]HIJKLMNOPQRSTUVWXYZ

INSTALL report for GenomicRanges on tokay2

This page was generated on 2018-10-17 08:34:38 -0400 (Wed, 17 Oct 2018).

Package 597/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GenomicRanges 1.32.7
Bioconductor Package Maintainer
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/GenomicRanges
Branch: RELEASE_3_7
Last Commit: 4c56dc8
Last Changed Date: 2018-09-19 23:58:20 -0400 (Wed, 19 Sep 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: GenomicRanges
Version: 1.32.7
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/GenomicRanges_1.32.7.tar.gz && rm -rf GenomicRanges.buildbin-libdir && mkdir GenomicRanges.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GenomicRanges.buildbin-libdir GenomicRanges_1.32.7.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL GenomicRanges_1.32.7.zip && rm GenomicRanges_1.32.7.tar.gz GenomicRanges_1.32.7.zip
StartedAt: 2018-10-16 19:20:26 -0400 (Tue, 16 Oct 2018)
EndedAt: 2018-10-16 19:22:11 -0400 (Tue, 16 Oct 2018)
EllapsedTime: 105.5 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/GenomicRanges_1.32.7.tar.gz && rm -rf GenomicRanges.buildbin-libdir && mkdir GenomicRanges.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GenomicRanges.buildbin-libdir GenomicRanges_1.32.7.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL GenomicRanges_1.32.7.zip && rm GenomicRanges_1.32.7.tar.gz GenomicRanges_1.32.7.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  146k  100  146k    0     0  2228k      0 --:--:-- --:--:-- --:--:-- 2482k

install for i386

* installing *source* package 'GenomicRanges' ...
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/S4Vectors/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/IRanges/include"   -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c IRanges_stubs.c -o IRanges_stubs.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/S4Vectors/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/IRanges/include"   -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c R_init_GenomicRanges.c -o R_init_GenomicRanges.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/S4Vectors/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/IRanges/include"   -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c S4Vectors_stubs.c -o S4Vectors_stubs.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/S4Vectors/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/IRanges/include"   -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c transcript_utils.c -o transcript_utils.o
transcript_utils.c: In function 'tlocs2rlocs':
transcript_utils.c:143:38: warning: 'end' may be used uninitialized in this function [-Wmaybe-uninitialized]
  return on_minus_strand ? end - tloc : start + tloc;
                                      ^
transcript_utils.c:120:24: note: 'end' was declared here
  int nexons, j, start, end, width;
                        ^
transcript_utils.c:143:38: warning: 'start' may be used uninitialized in this function [-Wmaybe-uninitialized]
  return on_minus_strand ? end - tloc : start + tloc;
                                      ^
transcript_utils.c:120:17: note: 'start' was declared here
  int nexons, j, start, end, width;
                 ^
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o GenomicRanges.dll tmp.def IRanges_stubs.o R_init_GenomicRanges.o S4Vectors_stubs.o transcript_utils.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/GenomicRanges.buildbin-libdir/GenomicRanges/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'GenomicRanges'
    finding HTML links ... done
    DelegatingGenomicRanges-class           html  
    GNCList-class                           html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/GNCList-class.Rd:46: file link 'NCList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/GNCList-class.Rd:47: file link 'NCLists' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/GNCList-class.Rd:48: file link 'IntegerRanges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/GNCList-class.Rd:49: file link 'IntegerRangesList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/GNCList-class.Rd:55: file link 'NCList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/GNCList-class.Rd:79: file link 'NCList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/GNCList-class.Rd:79: file link 'NCLists' in package 'IRanges' does not exist and so has been treated as a topic
    GPos-class                              html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/GPos-class.Rd:61: file link 'IPos' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/GPos-class.Rd:62: file link 'IRanges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/GPos-class.Rd:63: file link 'IRanges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/GPos-class.Rd:65: file link 'IPos' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/GPos-class.Rd:80: file link 'seqlevels' in package 'GenomeInfoDb' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/GPos-class.Rd:82: file link 'seqlengths' in package 'GenomeInfoDb' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/GPos-class.Rd:83: file link 'isCircular' in package 'GenomeInfoDb' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/GPos-class.Rd:84: file link 'genome' in package 'GenomeInfoDb' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/GPos-class.Rd:132: file link 'Vector' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/GPos-class.Rd:150: file link 'IPos' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/GPos-class.Rd:169: file link 'snpsBySeqname' in package 'BSgenome' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/GPos-class.Rd:170: file link 'snpsByOverlaps' in package 'BSgenome' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/GPos-class.Rd:171: file link 'snpsById' in package 'BSgenome' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/GPos-class.Rd:172: file link 'SNPlocs' in package 'BSgenome' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/GPos-class.Rd:175: file link 'SummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
    GRanges-class                           html  
    finding level-2 HTML links ... done

Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/GRanges-class.Rd:102: file link 'Rle' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/GRanges-class.Rd:104: file link 'IRanges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/GRanges-class.Rd:106: file link 'Rle' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/GRanges-class.Rd:108: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/GRanges-class.Rd:126: file link 'Rle' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/GRanges-class.Rd:130: file link 'IRanges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/GRanges-class.Rd:134: file link 'Rle' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/GRanges-class.Rd:179: file link 'Rle' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/GRanges-class.Rd:185: file link 'IntegerRanges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/GRanges-class.Rd:285: file link 'IntegerRangesList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/GRanges-class.Rd:309: file link 'IntegerRangesList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/GRanges-class.Rd:352: file link 'ManyToOneGrouping' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/GRanges-class.Rd:367: file link 'IntegerRangesList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/GRanges-class.Rd:404: file link '[' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/GRanges-class.Rd:432: file link 'c' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/GRanges-class.Rd:468: file link 'GAlignments' in package 'GenomicAlignments' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/GRanges-class.Rd:469: file link 'GAlignmentPairs' in package 'GenomicAlignments' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/GRanges-class.Rd:472: file link 'IRanges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/GRanges-class.Rd:472: file link 'DNAStringSet' in package 'Biostrings' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/GRanges-class.Rd:482: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/GRanges-class.Rd:520: file link 'IntegerRanges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/GRanges-class.Rd:522: file link 'Vector' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/GRanges-class.Rd:522: file link 'Rle' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/GRanges-class.Rd:523: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
    GRangesList-class                       html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/GRangesList-class.Rd:203: file link 'IRangesList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/GRangesList-class.Rd:363: file link 'RleList-class' in package 'IRanges' does not exist and so has been treated as a topic
    GenomicRanges-comparison                html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/GenomicRanges-comparison.Rd:115: file link 'reduce' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/GenomicRanges-comparison.Rd:115: file link 'disjoin' in package 'GenomicRanges' does not exist and so has been treated as a topic
    GenomicRangesList-class                 html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/GenomicRangesList-class.Rd:16: file link 'List' in package 'S4Vectors' does not exist and so has been treated as a topic
    absoluteRanges                          html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/absoluteRanges.Rd:39: file link 'seqlengths' in package 'GenomeInfoDb' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/absoluteRanges.Rd:41: file link 'seqlengths' in package 'GenomeInfoDb' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/absoluteRanges.Rd:50: file link 'IRanges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/absoluteRanges.Rd:65: file link 'IRanges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/absoluteRanges.Rd:86: file link 'IntegerRanges' in package 'IRanges' does not exist and so has been treated as a topic
    constraint                              html  
    coverage-methods                        html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/coverage-methods.Rd:13: file link 'coverage' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/coverage-methods.Rd:16: file link 'coverage' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/coverage-methods.Rd:17: file link 'IntegerRanges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/coverage-methods.Rd:17: file link 'IntegerRangesList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/coverage-methods.Rd:19: file link 'GAlignments' in package 'GenomicAlignments' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/coverage-methods.Rd:20: file link 'GAlignmentPairs' in package 'GenomicAlignments' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/coverage-methods.Rd:46: file link 'coverage' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/coverage-methods.Rd:58: file link 'coverage' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/coverage-methods.Rd:62: file link 'coverage' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/coverage-methods.Rd:73: file link 'RleList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/coverage-methods.Rd:81: file link 'coverage' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/coverage-methods.Rd:86: file link 'RleList' in package 'IRanges' does not exist and so has been treated as a topic
    findOverlaps-methods                    html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/findOverlaps-methods.Rd:26: file link 'findOverlaps' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/findOverlaps-methods.Rd:27: file link 'IntegerRanges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/findOverlaps-methods.Rd:28: file link 'IntegerRangesList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/findOverlaps-methods.Rd:30: file link 'GAlignments' in package 'GenomicAlignments' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/findOverlaps-methods.Rd:31: file link 'GAlignmentPairs' in package 'GenomicAlignments' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/findOverlaps-methods.Rd:32: file link 'GAlignmentsList' in package 'GenomicAlignments' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/findOverlaps-methods.Rd:60: file link 'findOverlaps' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/findOverlaps-methods.Rd:100: file link 'Hits' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/findOverlaps-methods.Rd:114: file link 'findOverlaps' in package 'IRanges' does not exist and so has been treated as a topic
    genomic-range-squeezers                 html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/genomic-range-squeezers.Rd:16: file link 'ranges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/genomic-range-squeezers.Rd:17: file link 'rglist' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/genomic-range-squeezers.Rd:19: file link 'IRanges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/genomic-range-squeezers.Rd:19: file link 'ranges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/genomic-range-squeezers.Rd:21: file link 'IRangesList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/genomic-range-squeezers.Rd:21: file link 'rglist' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/genomic-range-squeezers.Rd:32: file link 'GenomicRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/genomic-range-squeezers.Rd:33: file link 'RangedSummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/genomic-range-squeezers.Rd:34: file link 'GAlignments' in package 'GenomicAlignments' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/genomic-range-squeezers.Rd:35: file link 'GAlignmentPairs' in package 'GenomicAlignments' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/genomic-range-squeezers.Rd:36: file link 'GAlignmentsList' in package 'GenomicAlignments' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/genomic-range-squeezers.Rd:37: file link 'Pairs' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/genomic-range-squeezers.Rd:40: file link 'ranges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/genomic-range-squeezers.Rd:46: file link 'ranges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/genomic-range-squeezers.Rd:49: file link 'GAlignments' in package 'GenomicAlignments' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/genomic-range-squeezers.Rd:50: file link 'GAlignmentPairs' in package 'GenomicAlignments' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/genomic-range-squeezers.Rd:63: file link 'GAlignments' in package 'GenomicAlignments' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/genomic-range-squeezers.Rd:79: file link 'RangedSummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/genomic-range-squeezers.Rd:82: file link 'GAlignments' in package 'GenomicAlignments' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/genomic-range-squeezers.Rd:83: file link 'GAlignmentPairs' in package 'GenomicAlignments' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/genomic-range-squeezers.Rd:84: file link 'GAlignmentsList' in package 'GenomicAlignments' does not exist and so has been treated as a topic
    genomicvars                             html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/genomicvars.Rd:20: file link 'RleList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/genomicvars.Rd:49: file link 'RleList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/genomicvars.Rd:60: file link 'RleList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/genomicvars.Rd:80: file link 'Rle' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/genomicvars.Rd:91: file link 'RleList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/genomicvars.Rd:105: file link 'RleList' in package 'IRanges' does not exist and so has been treated as a topic
    inter-range-methods                     html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/inter-range-methods.Rd:104: file link 'reduce' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/inter-range-methods.Rd:112: file link 'gaps' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/inter-range-methods.Rd:121: file link 'disjoin' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/inter-range-methods.Rd:145: file link 'IntegerRanges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/inter-range-methods.Rd:153: file link 'endoapply' in package 'S4Vectors' does not exist and so has been treated as a topic
    intra-range-methods                     html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/intra-range-methods.Rd:39: file link 'GAlignments' in package 'GenomicAlignments' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/intra-range-methods.Rd:40: file link 'GAlignmentsList' in package 'GenomicAlignments' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/intra-range-methods.Rd:83: file link 'IntegerRanges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/intra-range-methods.Rd:87: file link 'IntegerRanges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/intra-range-methods.Rd:91: file link 'IntegerRanges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/intra-range-methods.Rd:160: file link 'IntegerRanges' in package 'IRanges' does not exist and so has been treated as a topic
    makeGRangesFromDataFrame                html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/makeGRangesFromDataFrame.Rd:16: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/makeGRangesFromDataFrame.Rd:37: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/makeGRangesFromDataFrame.Rd:120: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/makeGRangesFromDataFrame.Rd:142: file link 'getTable' in package 'rtracklayer' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/makeGRangesFromDataFrame.Rd:146: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
    makeGRangesListFromDataFrame            html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/makeGRangesListFromDataFrame.Rd:15: file link 'split' in package 'S4Vectors' does not exist and so has been treated as a topic
    nearest-methods                         html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/nearest-methods.Rd:69: file link 'Hits' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/nearest-methods.Rd:142: file link 'Hits' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/nearest-methods.Rd:145: file link 'Hits' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/nearest-methods.Rd:158: file link 'IntegerRanges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/nearest-methods.Rd:159: file link 'Hits' in package 'S4Vectors' does not exist and so has been treated as a topic
    phicoef                                 html  
    setops-methods                          html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/setops-methods.Rd:45: file link 'punion' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/setops-methods.Rd:45: file link 'pintersect' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/setops-methods.Rd:46: file link 'psetdiff' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/setops-methods.Rd:46: file link 'pgap' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/setops-methods.Rd:47: file link 'IntegerRanges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/setops-methods.Rd:155: file link 'IntegerRanges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/setops-methods.Rd:156: file link 'IntegerRangesList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/setops-methods.Rd:167: file link 'mendoapply' in package 'S4Vectors' does not exist and so has been treated as a topic
    strand-utils                            html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/strand-utils.Rd:52: file link 'Rle' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/strand-utils.Rd:64: file link 'Rle' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/strand-utils.Rd:65: file link 'Rle' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/strand-utils.Rd:73: file link 'Rle' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/strand-utils.Rd:96: file link 'Rle' in package 'S4Vectors' does not exist and so has been treated as a topic
    tile-methods                            html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/tile-methods.Rd:12: file link 'tile' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/tile-methods.Rd:12: file link 'slidingWindows' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/tile-methods.Rd:30: file link 'tile' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/tile-methods.Rd:35: file link 'tile' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/tile-methods.Rd:65: file link 'tile' in package 'IRanges' does not exist and so has been treated as a topic
    tileGenome                              html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/tileGenome.Rd:68: file link 'IntegerList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp4GSFFq/R.INSTALL1aa0343642d5/GenomicRanges/man/tileGenome.Rd:70: file link 'Views' in package 'IRanges' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'GenomicRanges' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/S4Vectors/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/IRanges/include"   -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c IRanges_stubs.c -o IRanges_stubs.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/S4Vectors/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/IRanges/include"   -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c R_init_GenomicRanges.c -o R_init_GenomicRanges.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/S4Vectors/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/IRanges/include"   -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c S4Vectors_stubs.c -o S4Vectors_stubs.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/S4Vectors/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/IRanges/include"   -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c transcript_utils.c -o transcript_utils.o
transcript_utils.c: In function 'tlocs2rlocs':
transcript_utils.c:143:38: warning: 'end' may be used uninitialized in this function [-Wmaybe-uninitialized]
  return on_minus_strand ? end - tloc : start + tloc;
                                      ^
transcript_utils.c:120:24: note: 'end' was declared here
  int nexons, j, start, end, width;
                        ^
transcript_utils.c:143:38: warning: 'start' may be used uninitialized in this function [-Wmaybe-uninitialized]
  return on_minus_strand ? end - tloc : start + tloc;
                                      ^
transcript_utils.c:120:17: note: 'start' was declared here
  int nexons, j, start, end, width;
                 ^
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o GenomicRanges.dll tmp.def IRanges_stubs.o R_init_GenomicRanges.o S4Vectors_stubs.o transcript_utils.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/GenomicRanges.buildbin-libdir/GenomicRanges/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GenomicRanges' as GenomicRanges_1.32.7.zip
* DONE (GenomicRanges)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'GenomicRanges' successfully unpacked and MD5 sums checked
In R CMD INSTALL