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INSTALL report for GenomicInteractions on tokay2

This page was generated on 2018-10-17 08:39:18 -0400 (Wed, 17 Oct 2018).

Package 596/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GenomicInteractions 1.14.0
Liz Ing-Simmons
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/GenomicInteractions
Branch: RELEASE_3_7
Last Commit: 9856ce2
Last Changed Date: 2018-04-30 10:35:34 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: GenomicInteractions
Version: 1.14.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/GenomicInteractions_1.14.0.tar.gz && rm -rf GenomicInteractions.buildbin-libdir && mkdir GenomicInteractions.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GenomicInteractions.buildbin-libdir GenomicInteractions_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL GenomicInteractions_1.14.0.zip && rm GenomicInteractions_1.14.0.tar.gz GenomicInteractions_1.14.0.zip
StartedAt: 2018-10-16 20:31:49 -0400 (Tue, 16 Oct 2018)
EndedAt: 2018-10-16 20:33:55 -0400 (Tue, 16 Oct 2018)
EllapsedTime: 126.0 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/GenomicInteractions_1.14.0.tar.gz && rm -rf GenomicInteractions.buildbin-libdir && mkdir GenomicInteractions.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GenomicInteractions.buildbin-libdir GenomicInteractions_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL GenomicInteractions_1.14.0.zip && rm GenomicInteractions_1.14.0.tar.gz GenomicInteractions_1.14.0.zip
###
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install for i386

* installing *source* package 'GenomicInteractions' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'GenomicInteractions'
    finding HTML links ... done
    GInteractions-subsetByFeatures-methods
                                            html  
    GenomicInteractions-class               html  
    GenomicInteractions-package             html  
    GenomicInteractions                     html  
    InteractionHelpers                      html  
    InteractionTrack-class                  html  
    InteractionTrack                        html  
    annotateInteractions                    html  
    annotateRegions                         html  
    asBED-GInteractions-method              html  
    availableDisplayPars                    html  
    calculateDistances                      html  
    categoriseInteractions                  html  
    countsBetweenAnchors-methods            html  
    export.bed12                            html  
    export.bedpe                            html  
    export.chiasig                          html  
    export.igraph                           html  
    get_binom_ligation_threshold            html  
    get_self_ligation_threshold             html  
    getters                                 html  
    finding level-2 HTML links ... done

    hg19.refseq.transcripts                 html  
    hic_example_data                        html  
    makeGenomicInteractionsFromFile         html  
    mm9_refseq_promoters                    html  
    plotAvgViewpoint                        html  
    plotCisTrans                            html  
    plotCounts                              html  
    plotDists                               html  
    plotInteractionAnnotations              html  
    plotSummaryStats                        html  
    plotViewpoint                           html  
    removeDups                              html  
    resetAnnotations                        html  
    sameStrand                              html  
    setters                                 html  
    sum-GInteractions-method                html  
    summariseByFeaturePairs                 html  
    summariseByFeatures                     html  
    thymus_enh                              html  
    updateObject-GenomicInteractions-method
                                            html  
    viewPoint                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'GenomicInteractions' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GenomicInteractions' as GenomicInteractions_1.14.0.zip
* DONE (GenomicInteractions)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'GenomicInteractions' successfully unpacked and MD5 sums checked
In R CMD INSTALL