Alina Selega
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/BUMHMM |
| Branch: RELEASE_3_7 |
| Last Commit: 16f08d9 |
| Last Changed Date: 2018-04-30 10:35:44 -0400 (Mon, 30 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:43:15 -0400 (Wed, 17 Oct 2018).
| Package 174/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| BUMHMM 1.4.0 Alina Selega
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: BUMHMM |
| Version: 1.4.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/BUMHMM_1.4.0.tar.gz && rm -rf BUMHMM.buildbin-libdir && mkdir BUMHMM.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BUMHMM.buildbin-libdir BUMHMM_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL BUMHMM_1.4.0.zip && rm BUMHMM_1.4.0.tar.gz BUMHMM_1.4.0.zip |
| StartedAt: 2018-10-16 20:29:54 -0400 (Tue, 16 Oct 2018) |
| EndedAt: 2018-10-16 20:30:39 -0400 (Tue, 16 Oct 2018) |
| EllapsedTime: 44.9 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/BUMHMM_1.4.0.tar.gz && rm -rf BUMHMM.buildbin-libdir && mkdir BUMHMM.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BUMHMM.buildbin-libdir BUMHMM_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL BUMHMM_1.4.0.zip && rm BUMHMM_1.4.0.tar.gz BUMHMM_1.4.0.zip
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install for i386
* installing *source* package 'BUMHMM' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'BUMHMM'
finding HTML links ... done
computeProbs html
finding level-2 HTML links ... done
computeStretches html
covFile html
docFile html
dorFile html
findPatternPos html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpYHS8wM/R.INSTALL22e0147e199e/BUMHMM/man/findPatternPos.Rd:33: file link 'stri_locate_all_fixed' in package 'stringi' does not exist and so has been treated as a topic
nuclPerm html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpYHS8wM/R.INSTALL22e0147e199e/BUMHMM/man/nuclPerm.Rd:19: file link 'permutations' in package 'gtools' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpYHS8wM/R.INSTALL22e0147e199e/BUMHMM/man/nuclPerm.Rd:40: file link 'permutations' in package 'gtools' does not exist and so has been treated as a topic
scaleDOR html
se html
selectNuclPos html
seq html
stabiliseVariance html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'BUMHMM' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BUMHMM' as BUMHMM_1.4.0.zip
* DONE (BUMHMM)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'BUMHMM' successfully unpacked and MD5 sums checked
In R CMD INSTALL