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CHECK report for MetaGxOvarian on tokay2

This page was generated on 2018-02-28 07:24:53 -0500 (Wed, 28 Feb 2018).

Package 842/1501HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MetaGxOvarian 0.99.7
Michael Zon
Snapshot Date: 2018-02-27 17:01:57 -0500 (Tue, 27 Feb 2018)
URL: https://git.bioconductor.org/packages/MetaGxOvarian
Branch: master
Last Commit: 19b1342
Last Changed Date: 2018-02-12 13:57:40 -0500 (Mon, 12 Feb 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  NotNeeded  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: MetaGxOvarian
Version: 0.99.7
Command: rm -rf MetaGxOvarian.buildbin-libdir MetaGxOvarian.Rcheck && mkdir MetaGxOvarian.buildbin-libdir MetaGxOvarian.Rcheck && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=MetaGxOvarian.buildbin-libdir MetaGxOvarian_0.99.7.tar.gz >MetaGxOvarian.Rcheck\00install.out 2>&1 && cp MetaGxOvarian.Rcheck\00install.out MetaGxOvarian-install.out && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --library=MetaGxOvarian.buildbin-libdir --install="check:MetaGxOvarian-install.out" --force-multiarch --no-vignettes --timings MetaGxOvarian_0.99.7.tar.gz
StartedAt: 2018-02-28 02:40:04 -0500 (Wed, 28 Feb 2018)
EndedAt: 2018-02-28 02:47:13 -0500 (Wed, 28 Feb 2018)
EllapsedTime: 429.3 seconds
RetCode: 0
Status:  OK  
CheckDir: MetaGxOvarian.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf MetaGxOvarian.buildbin-libdir MetaGxOvarian.Rcheck && mkdir MetaGxOvarian.buildbin-libdir MetaGxOvarian.Rcheck && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=MetaGxOvarian.buildbin-libdir MetaGxOvarian_0.99.7.tar.gz >MetaGxOvarian.Rcheck\00install.out 2>&1 && cp MetaGxOvarian.Rcheck\00install.out MetaGxOvarian-install.out  &&  C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --library=MetaGxOvarian.buildbin-libdir --install="check:MetaGxOvarian-install.out" --force-multiarch --no-vignettes --timings MetaGxOvarian_0.99.7.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.7-bioc/meat/MetaGxOvarian.Rcheck'
* using R Under development (unstable) (2018-01-28 r74175)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MetaGxOvarian/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'MetaGxOvarian' version '0.99.7'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MetaGxOvarian' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  7.5Mb
  sub-directories of 1Mb or more:
    html   6.9Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
                  user system elapsed
loadOvarianEsets 36.69   2.64   62.98
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                  user system elapsed
loadOvarianEsets 26.71   1.95    28.9
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'required.R'
 OK
** running tests for arch 'x64' ...
  Running 'required.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'C:/Users/biocbuild/bbs-3.7-bioc/meat/MetaGxOvarian.Rcheck/00check.log'
for details.

Installation output

MetaGxOvarian.Rcheck/00install.out


install for i386

* installing *source* package 'MetaGxOvarian' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'MetaGxOvarian'
    finding HTML links ... done
    E.MTAB.386                              html  
    GSE12418                                html  
    GSE12470                                html  
    GSE13876                                html  
    GSE14764                                html  
    GSE17260                                html  
    GSE18520                                html  
    GSE19829                                html  
    GSE20565                                html  
    GSE2109                                 html  
    GSE26193                                html  
    GSE26712                                html  
    GSE30009                                html  
    GSE30161                                html  
    GSE32062                                html  
    GSE32063                                html  
    GSE44104                                html  
    GSE49997                                html  
    GSE51088                                html  
    GSE6008                                 html  
    GSE6822                                 html  
    GSE8842                                 html  
    GSE9891                                 html  
    PMID15897565                            html  
    PMID17290060                            html  
    PMID19318476                            html  
    TCGA.RNASeqV2                           html  
    TCGAOVARIAN                             html  
    duplicates                              html  
    loadOvarianEsets                        html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'MetaGxOvarian' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MetaGxOvarian' as MetaGxOvarian_0.99.7.zip
* DONE (MetaGxOvarian)
In R CMD INSTALL
In R CMD INSTALL

Tests output

MetaGxOvarian.Rcheck/tests_i386/required.Rout


R Under development (unstable) (2018-01-28 r74175) -- "Unsuffered Consequences"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> #
> 
> proc.time()
   user  system elapsed 
   0.26    0.01    0.26

MetaGxOvarian.Rcheck/tests_x64/required.Rout


R Under development (unstable) (2018-01-28 r74175) -- "Unsuffered Consequences"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> #
> 
> proc.time()
   user  system elapsed 
   0.28    0.01    0.28

Example timings

MetaGxOvarian.Rcheck/examples_i386/MetaGxOvarian-Ex.timings

nameusersystemelapsed
loadOvarianEsets36.69 2.6462.98

MetaGxOvarian.Rcheck/examples_x64/MetaGxOvarian-Ex.timings

nameusersystemelapsed
loadOvarianEsets26.71 1.9528.90