Anthony Chiu
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/twoddpcr |
| Branch: RELEASE_3_6 |
| Last Commit: ea8e32e |
| Last Changed Date: 2018-01-10 05:54:16 -0400 (Wed, 10 Jan 2018) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:15:57 -0400 (Thu, 12 Apr 2018).
| Package 1433/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| twoddpcr 1.2.1 Anthony Chiu
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | [ OK ] | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | OK | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | |
| Package: twoddpcr |
| Version: 1.2.1 |
| Command: /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings twoddpcr_1.2.1.tar.gz |
| StartedAt: 2018-04-12 03:29:53 -0400 (Thu, 12 Apr 2018) |
| EndedAt: 2018-04-12 03:31:43 -0400 (Thu, 12 Apr 2018) |
| EllapsedTime: 110.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: twoddpcr.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings twoddpcr_1.2.1.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.6-bioc/meat/twoddpcr.Rcheck’
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘twoddpcr/DESCRIPTION’ ... OK
* this is package ‘twoddpcr’ version ‘1.2.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘twoddpcr’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 5.8Mb
sub-directories of 1Mb or more:
data 1.2Mb
doc 4.1Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
knnClassify 7.456 0.016 7.477
dropletPlot 5.980 0.032 6.044
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.6-bioc/meat/twoddpcr.Rcheck/00check.log’
for details.
twoddpcr.Rcheck/00install.out
* installing *source* package ‘twoddpcr’ ... ** R ** data *** moving datasets to lazyload DB ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (twoddpcr)
twoddpcr.Rcheck/tests/testthat.Rout
R version 3.4.4 (2018-03-15) -- "Someone to Lean On"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(twoddpcr)
>
> test_check("twoddpcr")
══ testthat results ═══════════════════════════════════════════════════════════
OK: 156 SKIPPED: 0 FAILED: 0
>
> proc.time()
user system elapsed
9.620 0.112 9.732
twoddpcr.Rcheck/twoddpcr-Ex.timings
| name | user | system | elapsed | |
| amplitudes | 0.712 | 0.008 | 0.720 | |
| basicsSummary | 0.004 | 0.000 | 0.006 | |
| castSummary | 0.064 | 0.008 | 0.069 | |
| classCov | 0.132 | 0.008 | 0.140 | |
| classMeans | 0.088 | 0.000 | 0.089 | |
| classStats | 0.108 | 0.000 | 0.105 | |
| clusterCentres | 1.080 | 0.004 | 1.085 | |
| copiesSummary | 0.04 | 0.00 | 0.04 | |
| ddpcrPlate-class | 0.312 | 0.000 | 0.312 | |
| ddpcrWell-class | 0.048 | 0.000 | 0.047 | |
| ddpcrWell-methods | 0.34 | 0.00 | 0.34 | |
| dropletPlot | 5.980 | 0.032 | 6.044 | |
| exportTable | 0.108 | 0.008 | 0.122 | |
| extractPlateName | 0.000 | 0.000 | 0.001 | |
| extractWellNames | 0.004 | 0.000 | 0.001 | |
| facetPlot | 3.124 | 0.024 | 3.151 | |
| flatPlot | 4.600 | 0.080 | 4.682 | |
| fullCopiesSummary | 0.020 | 0.000 | 0.017 | |
| fullCountsSummary | 0.024 | 0.004 | 0.031 | |
| ggplot.well | 4.728 | 0.032 | 4.768 | |
| gridClassify | 1.908 | 0.016 | 1.926 | |
| heatPlot | 2.332 | 0.000 | 2.331 | |
| kmeansClassify | 1.536 | 0.000 | 1.535 | |
| knnClassify | 7.456 | 0.016 | 7.477 | |
| mahalanobisRain | 0.888 | 0.004 | 0.891 | |
| mutantCopiesSummary | 0.004 | 0.000 | 0.006 | |
| numDroplets | 0.324 | 0.000 | 0.326 | |
| parseClusterCounts | 0.008 | 0.004 | 0.012 | |
| plateClassification | 0.996 | 0.004 | 0.999 | |
| plateClassificationMethod | 0.316 | 0.000 | 0.316 | |
| plateSummary | 2.260 | 0.000 | 2.262 | |
| positiveCounts | 0.068 | 0.000 | 0.068 | |
| readCSVDataFrame | 0.012 | 0.000 | 0.013 | |
| relabelClasses | 0.104 | 0.000 | 0.105 | |
| removeDropletClasses | 0.896 | 0.000 | 0.896 | |
| renormalisePlate | 3.752 | 0.000 | 3.757 | |
| sdRain | 3.352 | 0.000 | 3.356 | |
| setChannelNames | 0.000 | 0.000 | 0.003 | |
| setDropletVolume | 0.004 | 0.000 | 0.001 | |
| sortDataFrame | 0.000 | 0.000 | 0.001 | |
| sortWells | 0.368 | 0.000 | 0.367 | |
| thresholdClassify | 1.780 | 0.000 | 1.781 | |
| wellClassification | 0.024 | 0.000 | 0.023 | |
| wellClassificationMethod | 0.024 | 0.000 | 0.025 | |
| whiteTheme | 1.212 | 0.008 | 1.224 | |
| wildTypeCopiesSummary | 0.008 | 0.000 | 0.005 | |