Package: tigre

Version: 1.32.0

Command: /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings tigre_1.32.0.tar.gz

StartedAt: 2018-04-12 03:20:02 -0400 (Thu, 12 Apr 2018)

EndedAt: 2018-04-12 03:21:49 -0400 (Thu, 12 Apr 2018)

EllapsedTime: 107.2 seconds

RetCode: 0

Status:  OK

CheckDir: tigre.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings tigre_1.32.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.6-bioc/meat/tigre.Rcheck’
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘tigre/DESCRIPTION’ ... OK
* this is package ‘tigre’ version ‘1.32.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘tigre’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
             user system elapsed
processData 4.444   0.08   5.044
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

* installing *source* package ‘tigre’ ...
** libs
gcc -I/home/biocbuild/bbs-3.6-bioc/R/include -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c miscCFunctions.c -o miscCFunctions.o
g++ -shared -L/home/biocbuild/bbs-3.6-bioc/R/lib -L/usr/local/lib -o tigre.so miscCFunctions.o -L/home/biocbuild/bbs-3.6-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.6-bioc/meat/tigre.Rcheck/tigre/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (tigre)

name	user	system	elapsed
ExpressionTimeSeries-class	0.004	0.000	0.002
GPLearn	2.800	0.028	3.006
GPModel-class	0	0	0
GPPlot	0.000	0.000	0.001
GPRankTargets	0.000	0.000	0.001
SCGoptim	0	0	0
expTransform	0	0	0
export	0.000	0.000	0.001
generateModels	0.000	0.004	0.001
gpsimCreate	0.000	0.000	0.001
kernCompute	0.000	0.000	0.001
kernCreate	0.004	0.004	0.006
kernDiagGradX	0.016	0.000	0.016
kernGradient	0.004	0.000	0.001
lnDiffErfs	0	0	0
modelDisplay	0.220	0.008	0.226
modelExpandParam	0	0	0
modelExtractParam	0.104	0.004	0.107
modelGradient	0.748	0.000	0.747
modelTieParam	0.020	0.000	0.022
optimiDefaultConstraint	0.000	0.000	0.001
plotTimeseries	0.180	0.000	0.182
processData	4.444	0.080	5.044
scoreList-class	0.000	0.000	0.002
tigre-package	0.000	0.004	0.002