Andrey A Shabalin
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/ramwas |
| Branch: RELEASE_3_6 |
| Last Commit: d9374a2 |
| Last Changed Date: 2017-10-30 12:41:24 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:15:44 -0400 (Thu, 12 Apr 2018).
| Package 1117/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| ramwas 1.2.0 Andrey A Shabalin
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | [ OK ] | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | WARNINGS | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | |
| Package: ramwas |
| Version: 1.2.0 |
| Command: /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings ramwas_1.2.0.tar.gz |
| StartedAt: 2018-04-12 02:08:30 -0400 (Thu, 12 Apr 2018) |
| EndedAt: 2018-04-12 02:11:14 -0400 (Thu, 12 Apr 2018) |
| EllapsedTime: 163.9 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: ramwas.Rcheck |
| Warnings: 0 |
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###
### Running command:
###
### /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings ramwas_1.2.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.6-bioc/meat/ramwas.Rcheck’
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ramwas/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ramwas’ version ‘1.2.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ramwas’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 5.8Mb
sub-directories of 1Mb or more:
doc 5.5Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
getCpGset 4.968 0.06 5.261
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.6-bioc/meat/ramwas.Rcheck/00check.log’
for details.
ramwas.Rcheck/00install.out
* installing *source* package ‘ramwas’ ... ** libs gcc -I/home/biocbuild/bbs-3.6-bioc/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c rw_c_code.c -o rw_c_code.o g++ -shared -L/home/biocbuild/bbs-3.6-bioc/R/lib -L/usr/local/lib -o ramwas.so rw_c_code.o -L/home/biocbuild/bbs-3.6-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.6-bioc/meat/ramwas.Rcheck/ramwas/libs ** R ** inst ** preparing package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (ramwas)
ramwas.Rcheck/ramwas-Ex.timings
| name | user | system | elapsed | |
| QCs | 0.044 | 0.000 | 0.045 | |
| cachedRDSload | 0.692 | 0.000 | 0.692 | |
| findBestNpvs | 0.000 | 0.000 | 0.001 | |
| getCpGset | 4.968 | 0.060 | 5.261 | |
| getDataByLocation | 0.000 | 0.000 | 0.001 | |
| getTestsByLocation | 0.000 | 0.000 | 0.001 | |
| injectSNPsMAF | 0.42 | 0.00 | 0.42 | |
| insilicoFASTQ | 0.000 | 0.000 | 0.002 | |
| isAbsolutePath | 0.000 | 0.000 | 0.001 | |
| makefullpath | 0.000 | 0.000 | 0.001 | |
| orthonormalizeCovariates | 0.020 | 0.000 | 0.021 | |
| parameterDump | 0.020 | 0.000 | 0.016 | |
| parameterPreprocess | 0.004 | 0.012 | 0.020 | |
| parametersFromFile | 0.000 | 0.000 | 0.002 | |
| pipeline | 0.004 | 0.000 | 0.003 | |
| plotROC | 0.004 | 0.000 | 0.005 | |
| processCommandLine | 0.000 | 0.000 | 0.001 | |
| pvalue2qvalue | 0.000 | 0.000 | 0.001 | |
| qqplotFast | 1.320 | 0.060 | 1.385 | |
| ramwas0createArtificialData | 0.200 | 0.008 | 0.209 | |
| ramwasAnnotateLocations | 0.440 | 0.016 | 4.561 | |
| ramwasParameters | 0.000 | 0.000 | 0.001 | |
| rowcolSumSq | 0.000 | 0.000 | 0.002 | |
| testPhenotype | 0.092 | 0.000 | 0.093 | |