Evarist Planet
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/phenoTest |
| Branch: RELEASE_3_6 |
| Last Commit: 6b65018 |
| Last Changed Date: 2017-10-30 12:39:32 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:20:36 -0400 (Thu, 12 Apr 2018).
| Package 1031/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| phenoTest 1.26.0 Evarist Planet
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: phenoTest |
| Version: 1.26.0 |
| Command: rm -rf phenoTest.buildbin-libdir && mkdir phenoTest.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/phenoTest_1.26.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=phenoTest.buildbin-libdir --merge-multiarch phenoTest_1.26.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL phenoTest_1.26.0.zip && rm phenoTest_1.26.0.tar.gz phenoTest_1.26.0.zip |
| StartedAt: 2018-04-11 18:43:54 -0400 (Wed, 11 Apr 2018) |
| EndedAt: 2018-04-11 18:46:46 -0400 (Wed, 11 Apr 2018) |
| EllapsedTime: 172.2 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
##############################################################################
###
### Running command:
###
### rm -rf phenoTest.buildbin-libdir && mkdir phenoTest.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/phenoTest_1.26.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=phenoTest.buildbin-libdir --merge-multiarch phenoTest_1.26.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL phenoTest_1.26.0.zip && rm phenoTest_1.26.0.tar.gz phenoTest_1.26.0.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
65 971k 65 640k 0 0 12.4M 0 --:--:-- --:--:-- --:--:-- 13.0M
100 971k 100 971k 0 0 17.4M 0 --:--:-- --:--:-- --:--:-- 18.2M
install for i386
* installing *source* package 'phenoTest' ...
** R
** data
** inst
** preparing package for lazy loading
Warning: replacing previous import 'igraph::union' by 'GSEABase::union' when loading 'HTSanalyzeR'
** help
*** installing help indices
converting help for package 'phenoTest'
finding HTML links ... done
ClusterPhenoTest html
ExpressionPhenoTest html
barplotSignatures-methods html
barplotSignifSignatures-methods html
epheno-class html
finding level-2 HTML links ... done
epheno html
epheno2html html
ephenoGetters html
eset html
eset.genelevel html
eset2genelevel html
export2CSV-methods html
export2CSV html
findCopyNumber html
genesInArea html
getEsPositions html
getGo html
getGseaSignatures html
getKegg html
getVars2test-methods html
getVars2test html
gsea html
gsea.kegg.go html
gsea.subset html
gsea2html html
gseaData-class html
gseaSignatures-class html
gseaSignatures-methods html
gseaSignatures html
gseaSignaturesSign-class html
gseaSignaturesVar-class html
gseaSignificance html
gseaSignificanceSign-class html
gseaSignificanceVar-class html
heatmapPhenoTest-methods html
heatmapPhenoTest html
pAdjust-methods html
pAdjust html
pca html
phenoTest-package html
plot.gsea html
plot.gseaSignatures html
plots4epheno html
show-methods html
smoothCoxph html
summary.gsea html
summary.gseaSignificance html
write.html html
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: replacing previous import 'igraph::union' by 'GSEABase::union' when loading 'HTSanalyzeR'
In R CMD INSTALL
install for x64
* installing *source* package 'phenoTest' ...
** testing if installed package can be loaded
Warning: replacing previous import 'igraph::union' by 'GSEABase::union' when loading 'HTSanalyzeR'
* MD5 sums
packaged installation of 'phenoTest' as phenoTest_1.26.0.zip
* DONE (phenoTest)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'phenoTest' successfully unpacked and MD5 sums checked
In R CMD INSTALL