Package: nnNorm

Version: 2.42.0

Command: rm -rf nnNorm.buildbin-libdir nnNorm.Rcheck && mkdir nnNorm.buildbin-libdir nnNorm.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=nnNorm.buildbin-libdir nnNorm_2.42.0.tar.gz >nnNorm.Rcheck\00install.out 2>&1 && cp nnNorm.Rcheck\00install.out nnNorm-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=nnNorm.buildbin-libdir --install="check:nnNorm-install.out" --force-multiarch --no-vignettes --timings nnNorm_2.42.0.tar.gz

StartedAt: 2018-04-12 01:50:04 -0400 (Thu, 12 Apr 2018)

EndedAt: 2018-04-12 01:55:06 -0400 (Thu, 12 Apr 2018)

EllapsedTime: 301.8 seconds

RetCode: 0

Status:  OK

CheckDir: nnNorm.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf nnNorm.buildbin-libdir nnNorm.Rcheck && mkdir nnNorm.buildbin-libdir nnNorm.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=nnNorm.buildbin-libdir nnNorm_2.42.0.tar.gz >nnNorm.Rcheck\00install.out 2>&1 && cp nnNorm.Rcheck\00install.out nnNorm-install.out  &&  C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=nnNorm.buildbin-libdir --install="check:nnNorm-install.out" --force-multiarch --no-vignettes --timings nnNorm_2.42.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/nnNorm.Rcheck'
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'nnNorm/DESCRIPTION' ... OK
* this is package 'nnNorm' version '2.42.0'
* checking package namespace information ... NOTE
  Namespace with empty importFrom: 'methods'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'nnNorm' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Package listed in more than one of Depends, Imports, Suggests, Enhances:
  'marray'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
detectSpatialBias: no visible global function definition for 'as'
maNormNN: no visible global function definition for 'as'
maNormNN: no visible global function definition for 'slot<-'
Undefined global functions or variables:
  as slot<-
Consider adding
  importFrom("methods", "as", "slot<-")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
                   user system elapsed
maNormNN          66.24   0.00   66.24
compNorm          37.42   0.02   37.58
detectSpatialBias 26.78   0.01   26.79
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                   user system elapsed
maNormNN          70.93   0.03   70.98
compNorm          35.39   0.01   35.41
detectSpatialBias 27.02   0.03   27.05
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  'C:/Users/biocbuild/bbs-3.6-bioc/meat/nnNorm.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'nnNorm' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'nnNorm'
    finding HTML links ... done
    compNorm                                html  
    detectSpatialBias                       html  
    maNormNN                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'nnNorm' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'nnNorm' as nnNorm_2.42.0.zip
* DONE (nnNorm)
In R CMD INSTALL
In R CMD INSTALL