Josef Spidlen
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/flowQB |
| Branch: RELEASE_3_6 |
| Last Commit: 9ea8789 |
| Last Changed Date: 2017-10-30 12:39:42 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:21:50 -0400 (Thu, 12 Apr 2018).
| Package 490/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| flowQB 2.6.0 Josef Spidlen
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | [ OK ] | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | |
| Package: flowQB |
| Version: 2.6.0 |
| Command: rm -rf flowQB.buildbin-libdir flowQB.Rcheck && mkdir flowQB.buildbin-libdir flowQB.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=flowQB.buildbin-libdir flowQB_2.6.0.tar.gz >flowQB.Rcheck\00install.out 2>&1 && cp flowQB.Rcheck\00install.out flowQB-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=flowQB.buildbin-libdir --install="check:flowQB-install.out" --force-multiarch --no-vignettes --timings flowQB_2.6.0.tar.gz |
| StartedAt: 2018-04-12 00:02:42 -0400 (Thu, 12 Apr 2018) |
| EndedAt: 2018-04-12 00:27:38 -0400 (Thu, 12 Apr 2018) |
| EllapsedTime: 1495.2 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: flowQB.Rcheck |
| Warnings: 0 |
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### Running command:
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### rm -rf flowQB.buildbin-libdir flowQB.Rcheck && mkdir flowQB.buildbin-libdir flowQB.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=flowQB.buildbin-libdir flowQB_2.6.0.tar.gz >flowQB.Rcheck\00install.out 2>&1 && cp flowQB.Rcheck\00install.out flowQB-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=flowQB.buildbin-libdir --install="check:flowQB-install.out" --force-multiarch --no-vignettes --timings flowQB_2.6.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/flowQB.Rcheck'
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'flowQB/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'flowQB' version '2.6.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'flowQB' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
fit_beads 300.74 9.06 317.30
fit_led 9.84 0.29 19.81
qb_from_fits 9.92 0.08 10.00
calc_mean_sd_197 7.04 0.26 9.08
calc_mean_sd_capture_all 6.13 0.16 11.45
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
fit_beads 284.34 10.78 294.92
fit_led 11.38 0.25 11.39
qb_from_fits 9.97 0.13 10.09
calc_mean_sd_197 7.41 0.47 6.81
calc_mean_sd_capture_all 5.33 0.17 5.19
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'runTests.R'
OK
** running tests for arch 'x64' ...
Running 'runTests.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
flowQB.Rcheck/00install.out
install for i386
* installing *source* package 'flowQB' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'flowQB'
finding HTML links ... done
calc_mean_sd_197 html
calc_mean_sd_background html
calc_mean_sd_capture html
calc_mean_sd_capture_all html
calc_mean_sd_duke html
find_peak html
fit_beads html
fit_led html
fitted_ellipse_gate html
get_results_for_dyes html
peak_gate-methods html
finding level-2 HTML links ... done
pick_parameters-methods html
qb_from_fits html
split_in_two-methods html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'flowQB' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'flowQB' as flowQB_2.6.0.zip
* DONE (flowQB)
In R CMD INSTALL
In R CMD INSTALL
|
flowQB.Rcheck/tests_i386/runTests.Rout
R version 3.4.4 (2018-03-15) -- "Someone to Lean On"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage("flowQB")
Attaching package: 'flowCore'
The following object is masked from 'package:base':
sort
Loading required package: rJava
Loading required package: xlsxjars
RUNIT TEST PROTOCOL -- Thu Apr 12 00:21:29 2018
***********************************************
Number of test functions: 19
Number of errors: 0
Number of failures: 0
1 Test Suite :
flowQB RUnit Tests - 19 test functions, 0 errors, 0 failures
Number of test functions: 19
Number of errors: 0
Number of failures: 0
Warning messages:
1: Quick-TRANSfer stage steps exceeded maximum (= 3762700)
2: Quick-TRANSfer stage steps exceeded maximum (= 3762700)
3: Quick-TRANSfer stage steps exceeded maximum (= 3762700)
4: Quick-TRANSfer stage steps exceeded maximum (= 3762700)
5: Quick-TRANSfer stage steps exceeded maximum (= 3709000)
>
> proc.time()
user system elapsed
311.90 10.84 326.09
|
flowQB.Rcheck/tests_x64/runTests.Rout
R version 3.4.4 (2018-03-15) -- "Someone to Lean On"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage("flowQB")
Attaching package: 'flowCore'
The following object is masked from 'package:base':
sort
Loading required package: rJava
Loading required package: xlsxjars
RUNIT TEST PROTOCOL -- Thu Apr 12 00:27:33 2018
***********************************************
Number of test functions: 19
Number of errors: 0
Number of failures: 0
1 Test Suite :
flowQB RUnit Tests - 19 test functions, 0 errors, 0 failures
Number of test functions: 19
Number of errors: 0
Number of failures: 0
Warning messages:
1: Quick-TRANSfer stage steps exceeded maximum (= 3762700)
2: Quick-TRANSfer stage steps exceeded maximum (= 3762700)
3: Quick-TRANSfer stage steps exceeded maximum (= 3762700)
4: Quick-TRANSfer stage steps exceeded maximum (= 3762700)
5: Quick-TRANSfer stage steps exceeded maximum (= 3709000)
>
> proc.time()
user system elapsed
353.10 12.35 363.28
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flowQB.Rcheck/examples_i386/flowQB-Ex.timings
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flowQB.Rcheck/examples_x64/flowQB-Ex.timings
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