Zheng Wei
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/esATAC |
| Branch: RELEASE_3_6 |
| Last Commit: 68ab614 |
| Last Changed Date: 2018-03-06 17:39:54 -0400 (Tue, 06 Mar 2018) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:30:54 -0400 (Thu, 12 Apr 2018).
| Package 437/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| esATAC 1.0.23 Zheng Wei
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | OK | [ OK ] | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | |
| Package: esATAC |
| Version: 1.0.23 |
| Command: rm -rf esATAC.buildbin-libdir && mkdir esATAC.buildbin-libdir && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe --arch x64 CMD INSTALL --build --no-multiarch --library=esATAC.buildbin-libdir esATAC_1.0.23.tar.gz |
| StartedAt: 2018-04-12 04:37:16 -0400 (Thu, 12 Apr 2018) |
| EndedAt: 2018-04-12 04:39:21 -0400 (Thu, 12 Apr 2018) |
| EllapsedTime: 125.1 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: esATAC_1.0.23.zip |
| PackageFileSize: 6.529 MiB |
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### Running command:
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### rm -rf esATAC.buildbin-libdir && mkdir esATAC.buildbin-libdir && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe --arch x64 CMD INSTALL --build --no-multiarch --library=esATAC.buildbin-libdir esATAC_1.0.23.tar.gz
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* installing *source* package 'esATAC' ...
** libs
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.6-bioc/R/include" -DNDEBUG -DNDEBUG -DPLF_SYS_WIN -DR_EVN_FLAG -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"C:/local323/include" -O2 -Wall -mtune=generic -c BedLine.cpp -o BedLine.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.6-bioc/R/include" -DNDEBUG -DNDEBUG -DPLF_SYS_WIN -DR_EVN_FLAG -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"C:/local323/include" -O2 -Wall -mtune=generic -c BedUtils.cpp -o BedUtils.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.6-bioc/R/include" -DNDEBUG -DNDEBUG -DPLF_SYS_WIN -DR_EVN_FLAG -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"C:/local323/include" -O2 -Wall -mtune=generic -c ChrDivi.cpp -o ChrDivi.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.6-bioc/R/include" -DNDEBUG -DNDEBUG -DPLF_SYS_WIN -DR_EVN_FLAG -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"C:/local323/include" -O2 -Wall -mtune=generic -c CutCountPre.cpp -o CutCountPre.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.6-bioc/R/include" -DNDEBUG -DNDEBUG -DPLF_SYS_WIN -DR_EVN_FLAG -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"C:/local323/include" -O2 -Wall -mtune=generic -c CutSiteCount.cpp -o CutSiteCount.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.6-bioc/R/include" -DNDEBUG -DNDEBUG -DPLF_SYS_WIN -DR_EVN_FLAG -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"C:/local323/include" -O2 -Wall -mtune=generic -c LibComplexQC.cpp -o LibComplexQC.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.6-bioc/R/include" -DNDEBUG -DNDEBUG -DPLF_SYS_WIN -DR_EVN_FLAG -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"C:/local323/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.6-bioc/R/include" -DNDEBUG -DNDEBUG -DPLF_SYS_WIN -DR_EVN_FLAG -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"C:/local323/include" -O2 -Wall -mtune=generic -c SortBed.cpp -o SortBed.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.6-bioc/R/include" -DNDEBUG -DNDEBUG -DPLF_SYS_WIN -DR_EVN_FLAG -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"C:/local323/include" -O2 -Wall -mtune=generic -c rcpp_wrapper.cpp -o rcpp_wrapper.o
rcpp_wrapper.cpp: In function 'int CutSiteCount_wrapper(Rcpp::List)':
rcpp_wrapper.cpp:334:7: warning: variable 'tmp_k' set but not used [-Wunused-but-set-variable]
int tmp_k;
^
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.6-bioc/R/include" -DNDEBUG -DNDEBUG -DPLF_SYS_WIN -DR_EVN_FLAG -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"C:/local323/include" -O2 -Wall -mtune=generic -c renamer.cpp -o renamer.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.6-bioc/R/include" -DNDEBUG -DNDEBUG -DPLF_SYS_WIN -DR_EVN_FLAG -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/Rcpp/include" -I"C:/local323/include" -O2 -Wall -mtune=generic -c sam2bed.cc -o sam2bed.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o esATAC.dll tmp.def BedLine.o BedUtils.o ChrDivi.o CutCountPre.o CutSiteCount.o LibComplexQC.o RcppExports.o SortBed.o rcpp_wrapper.o renamer.o sam2bed.o -LC:/local323/lib/x64 -LC:/local323/lib -LC:/Users/biocbuild/bbs-3.6-bioc/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/esATAC.buildbin-libdir/esATAC/libs/x64
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'esATAC'
finding HTML links ... done
ATACProc-class html
BamToBed html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp6JuGTn/R.INSTALL1ef41c23957/esATAC/man/BamToBed.Rd:55: missing file link 'import'
BedToBigWig html
BedUtils html
Bowtie2Mapping html
finding level-2 HTML links ... done
CutSiteCountR html
CutSitePre html
FastQC html
FragLenDistr html
FripQC html
LibComplexQC html
PeakCallingFseq html
PeakQC html
RGo html
RMotifScan html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp6JuGTn/R.INSTALL1ef41c23957/esATAC/man/RMotifScan.Rd:30: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp6JuGTn/R.INSTALL1ef41c23957/esATAC/man/RMotifScan.Rd:31: missing file link 'import'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp6JuGTn/R.INSTALL1ef41c23957/esATAC/man/RMotifScan.Rd:87: missing file link 'subsetByOverlaps'
RMotifScanPair html
RPeakAnno html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp6JuGTn/R.INSTALL1ef41c23957/esATAC/man/RPeakAnno.Rd:41: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp6JuGTn/R.INSTALL1ef41c23957/esATAC/man/RPeakAnno.Rd:42: missing file link 'import'
RPeakComp html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp6JuGTn/R.INSTALL1ef41c23957/esATAC/man/RPeakComp.Rd:32: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp6JuGTn/R.INSTALL1ef41c23957/esATAC/man/RPeakComp.Rd:33: missing file link 'import'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp6JuGTn/R.INSTALL1ef41c23957/esATAC/man/RPeakComp.Rd:37: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp6JuGTn/R.INSTALL1ef41c23957/esATAC/man/RPeakComp.Rd:38: missing file link 'import'
RSNPs html
RemoveAdapter html
Renamer html
Rsortbam html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp6JuGTn/R.INSTALL1ef41c23957/esATAC/man/Rsortbam.Rd:46: missing file link 'sortBam'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp6JuGTn/R.INSTALL1ef41c23957/esATAC/man/Rsortbam.Rd:47: missing file link 'indexBam'
SamToBam html
SamToBed html
TSSQC html
UnzipAndMerge html
atacPipe2 html
atacRepsPipe html
atacRepsPipe2 html
configureValue html
esATAC-package html
getMotifPWM html
scanGenomeMotif html
** building package indices
** installing vignettes
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'esATAC' as esATAC_1.0.23.zip
* DONE (esATAC)
In R CMD INSTALL