Peng Ni
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/dSimer |
| Branch: RELEASE_3_6 |
| Last Commit: e900703 |
| Last Changed Date: 2017-10-30 12:41:17 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:42:59 -0400 (Thu, 12 Apr 2018).
| Package 390/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| dSimer 1.4.0 Peng Ni
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | OK | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | [ OK ] | OK | |
| Package: dSimer |
| Version: 1.4.0 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings dSimer_1.4.0.tar.gz |
| StartedAt: 2018-04-12 03:05:30 -0400 (Thu, 12 Apr 2018) |
| EndedAt: 2018-04-12 03:09:49 -0400 (Thu, 12 Apr 2018) |
| EllapsedTime: 259.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: dSimer.Rcheck |
| Warnings: 0 |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings dSimer_1.4.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.6-bioc/meat/dSimer.Rcheck’
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘dSimer/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘dSimer’ version ‘1.4.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘dSimer’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 5.1Mb
sub-directories of 1Mb or more:
data 3.1Mb
doc 1.6Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
get_GOterm2GeneAssos 28.773 4.837 34.137
FunSim 13.954 0.559 14.777
plot_heatmap 13.624 0.094 13.893
plot_net 12.797 0.082 13.060
PSB 11.306 0.276 11.728
HypergeometricTest 10.484 0.073 10.761
x2y_conv2_y2x 7.038 0.025 7.128
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/Users/biocbuild/bbs-3.6-bioc/meat/dSimer.Rcheck/00check.log’
for details.
dSimer.Rcheck/00install.out
* installing *source* package ‘dSimer’ ... ** libs clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c BOG.cpp -o BOG.o clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c GO2GeneAssos.cpp -o GO2GeneAssos.o clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c ICod.cpp -o ICod.o clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c PSB.cpp -o PSB.o clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c R_dSimer_init.c -o R_dSimer_init.o clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c Sun.cpp -o Sun.o clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o dSimer.so BOG.o GO2GeneAssos.o ICod.o PSB.o R_dSimer_init.o RcppExports.o Sun.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.6-bioc/meat/dSimer.Rcheck/dSimer/libs ** R ** data ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (dSimer)
dSimer.Rcheck/dSimer-Ex.timings
| name | user | system | elapsed | |
| BOG | 4.586 | 0.014 | 4.662 | |
| CosineDFV | 0.409 | 0.012 | 0.427 | |
| FunSim | 13.954 | 0.559 | 14.777 | |
| HumanNet_sample | 0.019 | 0.003 | 0.021 | |
| HypergeometricTest | 10.484 | 0.073 | 10.761 | |
| ICod | 1.123 | 0.017 | 1.159 | |
| InformationContent | 0.054 | 0.001 | 0.055 | |
| LLSn2List | 0.083 | 0.005 | 0.089 | |
| Normalize | 0.000 | 0.000 | 0.001 | |
| PPI_HPRD | 0.113 | 0.002 | 0.116 | |
| PSB | 11.306 | 0.276 | 11.728 | |
| Separation | 3.418 | 0.063 | 3.528 | |
| Separation2Similarity | 0.001 | 0.000 | 0.000 | |
| Sun_annotation | 0.061 | 0.002 | 0.067 | |
| Sun_function | 0.003 | 0.001 | 0.003 | |
| Sun_topology | 0.166 | 0.012 | 0.183 | |
| d2g_fundo_entrezid | 0.046 | 0.001 | 0.047 | |
| d2g_fundo_symbol | 0.046 | 0.001 | 0.052 | |
| d2g_separation | 0.041 | 0.000 | 0.045 | |
| d2go_sample | 0.002 | 0.001 | 0.002 | |
| d2s_hsdn | 0.102 | 0.002 | 0.106 | |
| d2s_hsdn_sample | 0.005 | 0.000 | 0.005 | |
| get_GOterm2GeneAssos | 28.773 | 4.837 | 34.137 | |
| go2g_sample | 0.077 | 0.005 | 0.081 | |
| graphlet_sig_hprd | 0.083 | 0.012 | 0.095 | |
| interactome | 0.440 | 0.005 | 0.446 | |
| jaccardindex | 0.002 | 0.001 | 0.003 | |
| orbit_dependency_count | 0.001 | 0.001 | 0.002 | |
| plot_bipartite | 0.331 | 0.004 | 0.337 | |
| plot_heatmap | 13.624 | 0.094 | 13.893 | |
| plot_net | 12.797 | 0.082 | 13.060 | |
| plot_topo | 0.252 | 0.007 | 0.263 | |
| setWeight | 0.002 | 0.000 | 0.003 | |
| weight | 0.002 | 0.000 | 0.003 | |
| x2y_conv2_y2x | 7.038 | 0.025 | 7.128 | |
| x2y_df2list | 0.021 | 0.000 | 0.024 | |