Tanja Muetze
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/RCy3 |
| Branch: RELEASE_3_6 |
| Last Commit: 67a8847 |
| Last Changed Date: 2017-10-30 12:41:08 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:27:04 -0400 (Thu, 12 Apr 2018).
| Package 1138/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| RCy3 1.8.0 Tanja Muetze
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ WARNINGS ] | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: RCy3 |
| Version: 1.8.0 |
| Command: rm -rf RCy3.buildbin-libdir RCy3.Rcheck && mkdir RCy3.buildbin-libdir RCy3.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=RCy3.buildbin-libdir RCy3_1.8.0.tar.gz >RCy3.Rcheck\00install.out 2>&1 && cp RCy3.Rcheck\00install.out RCy3-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=RCy3.buildbin-libdir --install="check:RCy3-install.out" --force-multiarch --no-vignettes --timings RCy3_1.8.0.tar.gz |
| StartedAt: 2018-04-12 02:31:54 -0400 (Thu, 12 Apr 2018) |
| EndedAt: 2018-04-12 02:33:33 -0400 (Thu, 12 Apr 2018) |
| EllapsedTime: 98.3 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: RCy3.Rcheck |
| Warnings: 1 |
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### Running command:
###
### rm -rf RCy3.buildbin-libdir RCy3.Rcheck && mkdir RCy3.buildbin-libdir RCy3.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=RCy3.buildbin-libdir RCy3_1.8.0.tar.gz >RCy3.Rcheck\00install.out 2>&1 && cp RCy3.Rcheck\00install.out RCy3-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=RCy3.buildbin-libdir --install="check:RCy3-install.out" --force-multiarch --no-vignettes --timings RCy3_1.8.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/RCy3.Rcheck'
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'RCy3/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'RCy3' version '1.8.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'RCy3' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.BBSOverride: no visible global function definition for 'as'
is.classic.graph: no visible global function definition for 'is'
is.multiGraph: no visible global function definition for 'is'
Undefined global functions or variables:
as is
Consider adding
importFrom("methods", "as", "is")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
'copyCytoscapeNetwork' 'renameCytoscapeNetwork' 'selectAllEdges'
'selectAllNodes'
Undocumented S4 methods:
generic 'copyCytoscapeNetwork' and siglist 'CytoscapeWindowClass'
generic 'renameCytoscapeNetwork' and siglist 'CytoscapeWindowClass'
generic 'selectAllEdges' and siglist 'CytoscapeWindowClass'
generic 'selectAllNodes' and siglist 'CytoscapeWindowClass'
All user-level objects in a package (including S4 classes and methods)
should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'runTests.R'
OK
** running tests for arch 'x64' ...
Running 'runTests.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 1 NOTE
See
'C:/Users/biocbuild/bbs-3.6-bioc/meat/RCy3.Rcheck/00check.log'
for details.
RCy3.Rcheck/00install.out
install for i386
* installing *source* package 'RCy3' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'RCy3'
finding HTML links ... done
CytoscapeConnection html
CytoscapeConnectionClass-class html
CytoscapeWindow html
CytoscapeWindowClass-class html
addCyEdge html
addCyNode html
addGraphToGraph html
clearSelection html
copyVisualStyle html
createWindow html
createWindowFromSelection html
cy2.edge.names html
cyPlot html
deleteAllWindows html
deleteEdgeAttribute html
deleteNodeAttribute html
deleteSelectedEdges html
deleteSelectedNodes html
deleteWindow html
demoSimpleGraph html
displayGraph html
dockPanel html
eda html
eda.names html
existing.CytoscapeWindow html
fitContent html
fitSelectedContent html
floatPanel html
getAdjacentEdgeNames html
getAllEdgeAttributes html
getAllEdges html
getAllNodeAttributes html
getAllNodes html
getArrowShapes html
getAttributeClassNames html
getCenter html
getDefaultBackgroundColor html
getDefaultEdgeReverseSelectionColor html
getDefaultEdgeSelectionColor html
getDefaultNodeReverseSelectionColor html
getDefaultNodeSelectionColor html
getDirectlyModifiableVisualProperties html
getEdgeAttribute html
getEdgeAttributeNames html
getEdgeCount html
getFirstNeighbors html
getGraph html
getGraphFromCyWindow html
getLayoutNameMapping html
getLayoutNames html
getLayoutPropertyNames html
getLayoutPropertyType html
getLayoutPropertyValue html
getLineStyles html
getNodeAttribute html
getNodeAttributeNames html
getNodeCount html
getNodePosition html
getNodeShapes html
getNodeSize html
getSelectedEdgeCount html
getSelectedEdges html
getSelectedNodeCount html
getSelectedNodes html
getViewCoordinates html
getVisualStyleNames html
getWindowCount html
getWindowID html
getWindowList html
getZoom html
hideAllPanels html
hideNodes html
hidePanel html
hideSelectedEdges html
hideSelectedNodes html
initEdgeAttribute html
initNodeAttribute html
invertEdgeSelection html
invertNodeSelection html
layoutNetwork html
lockNodeDimensions html
makeRandomGraph html
makeSimpleGraph html
noa html
noa.names html
ping html
pluginVersion html
predictTimeToDisplayGraph html
raiseWindow html
redraw html
restoreLayout html
saveImage html
saveLayout html
saveNetwork html
selectEdges html
selectFirstNeighborsOfSelectedNodes html
selectNodes html
sendEdges html
sendNodes html
setCenter html
setDefaultBackgroundColor html
setDefaultEdgeColor html
setDefaultEdgeFontSize html
setDefaultEdgeLineWidth html
setDefaultEdgeReverseSelectionColor html
setDefaultEdgeSelectionColor html
setDefaultEdgeSourceArrowColor html
setDefaultEdgeTargetArrowColor html
setDefaultNodeBorderColor html
setDefaultNodeBorderWidth html
setDefaultNodeColor html
setDefaultNodeFontSize html
setDefaultNodeLabelColor html
setDefaultNodeReverseSelectionColor html
setDefaultNodeSelectionColor html
setDefaultNodeShape html
setDefaultNodeSize html
setEdgeAttributes html
setEdgeAttributesDirect html
setEdgeColorDirect html
setEdgeColorRule html
setEdgeFontSizeDirect html
setEdgeLabelColorDirect html
setEdgeLabelDirect html
setEdgeLabelOpacityDirect html
setEdgeLabelRule html
setEdgeLineStyleDirect html
setEdgeLineStyleRule html
setEdgeLineWidthDirect html
setEdgeLineWidthRule html
setEdgeOpacityDirect html
setEdgeOpacityRule html
setEdgeSourceArrowColorDirect html
setEdgeSourceArrowColorRule html
setEdgeSourceArrowOpacityDirect html
setEdgeSourceArrowRule html
setEdgeSourceArrowShapeDirect html
setEdgeTargetArrowColorDirect html
setEdgeTargetArrowColorRule html
setEdgeTargetArrowOpacityDirect html
setEdgeTargetArrowRule html
setEdgeTargetArrowShapeDirect html
setEdgeTooltipDirect html
setEdgeTooltipRule html
setGraph html
setLayoutProperties html
setNodeAttributes html
setNodeAttributesDirect html
setNodeBorderColorDirect html
setNodeBorderColorRule html
setNodeBorderOpacityDirect html
setNodeBorderWidthDirect html
setNodeBorderWidthRule html
setNodeColorDirect html
setNodeColorRule html
setNodeFillOpacityDirect html
setNodeFontSizeDirect html
setNodeHeightDirect html
setNodeImageDirect html
setNodeLabelColorDirect html
setNodeLabelDirect html
setNodeLabelOpacityDirect html
setNodeLabelRule html
setNodeOpacityDirect html
setNodeOpacityRule html
setNodePosition html
setNodeShapeDirect html
setNodeShapeRule html
setNodeSizeDirect html
setNodeSizeRule html
setNodeTooltipRule html
setNodeWidthDirect html
setTooltipDismissDelay html
setTooltipInitialDelay html
setVisualStyle html
setWindowSize html
setZoom html
showGraphicsDetails html
unhideAll html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'RCy3' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RCy3' as RCy3_1.8.0.zip
* DONE (RCy3)
In R CMD INSTALL
In R CMD INSTALL
|
RCy3.Rcheck/tests_i386/runTests.Rout
R version 3.4.4 (2018-03-15) -- "Someone to Lean On"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # tests disabled as the Bioconductor build system no longer supports interactive sessions
> #require(RCy3) || stop("unable to load RCy3")
> #BiocGenerics:::testPackage('RCy3')
>
> proc.time()
user system elapsed
0.21 0.03 0.23
|
RCy3.Rcheck/tests_x64/runTests.Rout
R version 3.4.4 (2018-03-15) -- "Someone to Lean On"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # tests disabled as the Bioconductor build system no longer supports interactive sessions
> #require(RCy3) || stop("unable to load RCy3")
> #BiocGenerics:::testPackage('RCy3')
>
> proc.time()
user system elapsed
0.17 0.01 0.18
|
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RCy3.Rcheck/examples_i386/RCy3-Ex.timings
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RCy3.Rcheck/examples_x64/RCy3-Ex.timings
|