Benjamin Haibe-Kains
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/PharmacoGx |
| Branch: RELEASE_3_6 |
| Last Commit: 38d1b76 |
| Last Changed Date: 2018-03-25 12:24:57 -0400 (Sun, 25 Mar 2018) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:28:35 -0400 (Thu, 12 Apr 2018).
| Package 1028/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| PharmacoGx 1.8.3 Benjamin Haibe-Kains
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | [ OK ] | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | |
| Package: PharmacoGx |
| Version: 1.8.3 |
| Command: rm -rf PharmacoGx.buildbin-libdir PharmacoGx.Rcheck && mkdir PharmacoGx.buildbin-libdir PharmacoGx.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=PharmacoGx.buildbin-libdir PharmacoGx_1.8.3.tar.gz >PharmacoGx.Rcheck\00install.out 2>&1 && cp PharmacoGx.Rcheck\00install.out PharmacoGx-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=PharmacoGx.buildbin-libdir --install="check:PharmacoGx-install.out" --force-multiarch --no-vignettes --timings PharmacoGx_1.8.3.tar.gz |
| StartedAt: 2018-04-12 02:07:39 -0400 (Thu, 12 Apr 2018) |
| EndedAt: 2018-04-12 02:11:29 -0400 (Thu, 12 Apr 2018) |
| EllapsedTime: 229.9 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: PharmacoGx.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf PharmacoGx.buildbin-libdir PharmacoGx.Rcheck && mkdir PharmacoGx.buildbin-libdir PharmacoGx.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=PharmacoGx.buildbin-libdir PharmacoGx_1.8.3.tar.gz >PharmacoGx.Rcheck\00install.out 2>&1 && cp PharmacoGx.Rcheck\00install.out PharmacoGx-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=PharmacoGx.buildbin-libdir --install="check:PharmacoGx-install.out" --force-multiarch --no-vignettes --timings PharmacoGx_1.8.3.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/PharmacoGx.Rcheck' * using R version 3.4.4 (2018-03-15) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'PharmacoGx/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'PharmacoGx' version '1.8.3' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'PharmacoGx' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... NOTE Note: found 2251 marked UTF-8 strings * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'C:/Users/biocbuild/bbs-3.6-bioc/meat/PharmacoGx.Rcheck/00check.log' for details.
PharmacoGx.Rcheck/00install.out
install for i386
* installing *source* package 'PharmacoGx' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'PharmacoGx'
finding HTML links ... done
CCLEsmall html
CMAPsmall html
GDSCsmall html
HDAC_genes html
LogLogisticRegression html
PharmacoSet-class html
PharmacoSet html
amcc html
availablePSets html
cellInfo-set html
cellInfo html
cellNames-set html
cellNames html
checkPSetStructure html
computeABC html
computeAUC html
computeAmax html
computeICn html
computeSlope html
connectivityScore html
cosinePerm html
dateCreated html
dim-PharmacoSet-method html
downloadPSet html
downloadPertSig html
drugDoseResponseCurve html
drugInfo-set html
drugInfo html
drugNames-set html
drugNames html
drugPerturbationSig html
drugSensitivitySig html
fNames html
featureInfo-set html
featureInfo html
filterNoisyCurves html
gwc html
intersectList html
intersectPSet html
mDataNames html
mcc html
molecularProfiles-set html
molecularProfiles html
pSetName html
pertNumber-set html
pertNumber html
phenoInfo-set html
phenoInfo html
sensNumber-set html
sensNumber html
sensitivityInfo-set html
sensitivityInfo html
sensitivityMeasures html
sensitivityProfiles-set html
sensitivityProfiles html
show-PharmacoSet-method html
show-PharmacoSig-method html
showSigAnnot html
sub-PharmacoSet-method html
subsetTo html
summarizeMolecularProfiles html
summarizeSensitivityProfiles html
symSetDiffList html
unionList html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'PharmacoGx' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'PharmacoGx' as PharmacoGx_1.8.3.zip
* DONE (PharmacoGx)
In R CMD INSTALL
In R CMD INSTALL
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PharmacoGx.Rcheck/examples_i386/PharmacoGx-Ex.timings
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PharmacoGx.Rcheck/examples_x64/PharmacoGx-Ex.timings
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