Stefano de Pretis
| Snapshot Date: 2018-04-04 16:45:02 -0400 (Wed, 04 Apr 2018) |
| URL: https://git.bioconductor.org/packages/LowMACA |
| Branch: RELEASE_3_6 |
| Last Commit: 1f18a12 |
| Last Changed Date: 2017-10-30 12:40:50 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-05 14:23:43 -0400 (Thu, 05 Apr 2018).
| Package 758/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| LowMACA 1.10.0 Stefano de Pretis
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | [ OK ] | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | WARNINGS | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | ERROR | OK |
| Package: LowMACA |
| Version: 1.10.0 |
| Command: /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings LowMACA_1.10.0.tar.gz |
| StartedAt: 2018-04-05 00:37:20 -0400 (Thu, 05 Apr 2018) |
| EndedAt: 2018-04-05 00:47:04 -0400 (Thu, 05 Apr 2018) |
| EllapsedTime: 583.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: LowMACA.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings LowMACA_1.10.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.6-bioc/meat/LowMACA.Rcheck’
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘LowMACA/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘LowMACA’ version ‘1.10.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘LowMACA’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
allPfamAnalysis 138.180 8.460 146.562
lfmSingleSequence 73.488 3.228 76.988
LowMACA-class 10.628 1.912 37.337
LowMACA-package 9.196 1.508 24.963
setup 6.700 0.596 67.017
lmPlotSingleSequence 4.312 1.144 5.665
alignSequences 4.616 0.516 12.117
lmPlot 3.896 1.196 5.337
getMutations 0.728 0.144 7.823
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
LowMACA.Rcheck/00install.out
* installing *source* package ‘LowMACA’ ... ** R ** data ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded Checking if clustalo is in the PATH... Checking clustalo Version... Checking perl installation... Checking perl modules XML::Simple and LWP... * DONE (LowMACA)
LowMACA.Rcheck/LowMACA-Ex.timings
| name | user | system | elapsed | |
| BLOSUM62 | 0.008 | 0.004 | 0.013 | |
| LowMACA-class | 10.628 | 1.912 | 37.337 | |
| LowMACA-package | 9.196 | 1.508 | 24.963 | |
| LowMACA_AML | 0.016 | 0.016 | 0.033 | |
| alignSequences | 4.616 | 0.516 | 12.117 | |
| allPfamAnalysis | 138.180 | 8.460 | 146.562 | |
| bpAll | 1.120 | 0.008 | 1.128 | |
| entropy | 1.220 | 0.000 | 1.227 | |
| getMutations | 0.728 | 0.144 | 7.823 | |
| lfm | 1.932 | 0.036 | 1.974 | |
| lfmSingleSequence | 73.488 | 3.228 | 76.988 | |
| lmAlignment | 0.036 | 0.008 | 0.042 | |
| lmEntropy | 1.116 | 0.000 | 1.119 | |
| lmMutations | 0.040 | 0.000 | 0.038 | |
| lmObj | 0.076 | 0.004 | 0.081 | |
| lmParams | 0.484 | 0.084 | 0.588 | |
| lmPlot | 3.896 | 1.196 | 5.337 | |
| lmPlotSingleSequence | 4.312 | 1.144 | 5.665 | |
| mapMutations | 0.508 | 0.008 | 0.515 | |
| newLowMACA | 2.844 | 0.040 | 2.888 | |
| nullProfile | 1.216 | 0.024 | 1.245 | |
| parallelize | 0.500 | 0.000 | 0.503 | |
| protter | 1.072 | 0.004 | 3.490 | |
| setup | 6.700 | 0.596 | 67.017 | |
| showTumorType | 0.040 | 0.052 | 0.311 | |