Bruno Contrino
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/Doscheda |
| Branch: RELEASE_3_6 |
| Last Commit: 41aa867 |
| Last Changed Date: 2017-10-30 12:41:36 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:30:19 -0400 (Thu, 12 Apr 2018).
| Package 385/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| Doscheda 1.0.0 Bruno Contrino
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | [ OK ] | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | |
| Package: Doscheda |
| Version: 1.0.0 |
| Command: rm -rf Doscheda.buildbin-libdir Doscheda.Rcheck && mkdir Doscheda.buildbin-libdir Doscheda.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=Doscheda.buildbin-libdir Doscheda_1.0.0.tar.gz >Doscheda.Rcheck\00install.out 2>&1 && cp Doscheda.Rcheck\00install.out Doscheda-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=Doscheda.buildbin-libdir --install="check:Doscheda-install.out" --force-multiarch --no-vignettes --timings Doscheda_1.0.0.tar.gz |
| StartedAt: 2018-04-11 23:36:27 -0400 (Wed, 11 Apr 2018) |
| EndedAt: 2018-04-11 23:42:16 -0400 (Wed, 11 Apr 2018) |
| EllapsedTime: 348.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: Doscheda.Rcheck |
| Warnings: 0 |
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### Running command:
###
### rm -rf Doscheda.buildbin-libdir Doscheda.Rcheck && mkdir Doscheda.buildbin-libdir Doscheda.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=Doscheda.buildbin-libdir Doscheda_1.0.0.tar.gz >Doscheda.Rcheck\00install.out 2>&1 && cp Doscheda.Rcheck\00install.out Doscheda-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=Doscheda.buildbin-libdir --install="check:Doscheda-install.out" --force-multiarch --no-vignettes --timings Doscheda_1.0.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/Doscheda.Rcheck'
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'Doscheda/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'Doscheda' version '1.0.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'Doscheda' can be installed ... OK
* checking installed package size ... NOTE
installed size is 5.3Mb
sub-directories of 1Mb or more:
data 2.1Mb
shiny-examples 2.0Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
fitModel-methods 24.96 0.50 29.18
runDoscheda 16.41 0.03 17.96
pcaPlot-methods 5.54 0.05 8.76
densityPlot-methods 3.66 0.02 5.11
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
fitModel-methods 19.05 0.34 22.42
runDoscheda 15.83 0.00 17.84
pcaPlot-methods 5.94 0.05 8.97
runNormalisation-methods 3.87 0.16 5.83
densityPlot-methods 3.55 0.05 5.13
corrPlot-methods 3.34 0.09 5.14
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'testthat.R'
OK
** running tests for arch 'x64' ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'C:/Users/biocbuild/bbs-3.6-bioc/meat/Doscheda.Rcheck/00check.log'
for details.
Doscheda.Rcheck/00install.out
install for i386
* installing *source* package 'Doscheda' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
in method for 'getInput' with signature '"ChemoProtSet"': no definition for class "ChemoProtSet"
in method for 'getNorm' with signature '"ChemoProtSet"': no definition for class "ChemoProtSet"
in method for 'getFinal' with signature '"ChemoProtSet"': no definition for class "ChemoProtSet"
in method for 'getParameters' with signature '"ChemoProtSet"': no definition for class "ChemoProtSet"
in method for 'getDatasets' with signature '"ChemoProtSet"': no definition for class "ChemoProtSet"
in method for 'boxplot' with signature '"ChemoProtSet"': no definition for class "ChemoProtSet"
in method for 'corrPlot' with signature '"ChemoProtSet"': no definition for class "ChemoProtSet"
in method for 'densityPlot' with signature '"ChemoProtSet"': no definition for class "ChemoProtSet"
Creating a new generic function for 'meanSdPlot' in package 'Doscheda'
** help
*** installing help indices
converting help for package 'Doscheda'
finding HTML links ... done
ChemoProtSet-class html
boxplot-ChemoProtSet-method html
corrPlot-methods html
densityPlot-methods html
doscheda html
doschedaApp html
doschedaData html
fitModel-methods html
getDatasets-methods html
getFinal-methods html
getInput-methods html
getNorm-methods html
getParameters-methods html
makeReport html
meanSdPlot-methods html
pcaPlot-methods html
plot.ChemoProtSet html
processedExample html
removePeptides-methods html
replicatePlot-methods html
runDoscheda html
runNormalisation-methods html
setData-methods html
setParameters-methods html
volcanoPlot-methods html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'Doscheda' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Doscheda' as Doscheda_1.0.0.zip
* DONE (Doscheda)
In R CMD INSTALL
In R CMD INSTALL
|
Doscheda.Rcheck/tests_i386/testthat.Rout
R version 3.4.4 (2018-03-15) -- "Someone to Lean On"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(Doscheda)
>
> test_check("Doscheda")
== testthat results ===========================================================
OK: 1 SKIPPED: 0 FAILED: 0
>
> proc.time()
user system elapsed
5.95 0.26 8.06
|
Doscheda.Rcheck/tests_x64/testthat.Rout
R version 3.4.4 (2018-03-15) -- "Someone to Lean On"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(Doscheda)
>
> test_check("Doscheda")
== testthat results ===========================================================
OK: 1 SKIPPED: 0 FAILED: 0
>
> proc.time()
user system elapsed
7.18 0.20 9.39
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Doscheda.Rcheck/examples_i386/Doscheda-Ex.timings
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Doscheda.Rcheck/examples_x64/Doscheda-Ex.timings
|