Vanja Haberle
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/CAGEr |
| Branch: RELEASE_3_6 |
| Last Commit: 91d4ab7 |
| Last Changed Date: 2017-10-30 12:39:59 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:22:33 -0400 (Thu, 12 Apr 2018).
| Package 171/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| CAGEr 1.20.0 Vanja Haberle
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: CAGEr |
| Version: 1.20.0 |
| Command: rm -rf CAGEr.buildbin-libdir && mkdir CAGEr.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/CAGEr_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=CAGEr.buildbin-libdir --merge-multiarch CAGEr_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL CAGEr_1.20.0.zip && rm CAGEr_1.20.0.tar.gz CAGEr_1.20.0.zip |
| StartedAt: 2018-04-11 18:50:48 -0400 (Wed, 11 Apr 2018) |
| EndedAt: 2018-04-11 18:52:33 -0400 (Wed, 11 Apr 2018) |
| EllapsedTime: 105.0 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### rm -rf CAGEr.buildbin-libdir && mkdir CAGEr.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/CAGEr_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=CAGEr.buildbin-libdir --merge-multiarch CAGEr_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL CAGEr_1.20.0.zip && rm CAGEr_1.20.0.tar.gz CAGEr_1.20.0.zip
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install for i386
* installing *source* package 'CAGEr' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'CAGEr'
finding HTML links ... done
CAGEr-package html
CAGEset-class html
CTSSclusteringMethod html
CTSScoordinates html
CTSSnormalizedTpm html
CTSStagCount html
FANTOM5humanSamples html
FANTOM5mouseSamples html
aggregateTagClusters html
clusterCTSS html
consensusClusters html
consensusClustersTpm html
cumulativeCTSSdistribution html
exampleCAGEset html
exportCTSStoBedGraph html
exportToBed html
expressionClasses html
extractExpressionClass html
genomeName html
getCTSS html
getExpressionProfiles html
getShiftingPromoters html
importPublicData html
inputFiles html
inputFilesType html
librarySizes html
mergeCAGEsets html
mergeSamples html
normalizeTagCount html
plotCorrelation html
plotExpressionProfiles html
plotInterquantileWidth html
plotReverseCumulatives html
quantilePositions html
sampleLabels html
scoreShift html
setColors html
show-methods html
tagClusters html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'CAGEr' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CAGEr' as CAGEr_1.20.0.zip
* DONE (CAGEr)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'CAGEr' successfully unpacked and MD5 sums checked
In R CMD INSTALL