Sean Davis
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/ACME |
| Branch: RELEASE_3_6 |
| Last Commit: 1f53d43 |
| Last Changed Date: 2017-10-30 12:39:20 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:18:39 -0400 (Thu, 12 Apr 2018).
| Package 12/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| ACME 2.34.0 Sean Davis
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: ACME |
| Version: 2.34.0 |
| Command: rm -rf ACME.buildbin-libdir && mkdir ACME.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/ACME_2.34.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=ACME.buildbin-libdir --merge-multiarch ACME_2.34.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL ACME_2.34.0.zip && rm ACME_2.34.0.tar.gz ACME_2.34.0.zip |
| StartedAt: 2018-04-11 18:20:21 -0400 (Wed, 11 Apr 2018) |
| EndedAt: 2018-04-11 18:21:36 -0400 (Wed, 11 Apr 2018) |
| EllapsedTime: 74.3 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### rm -rf ACME.buildbin-libdir && mkdir ACME.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/ACME_2.34.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=ACME.buildbin-libdir --merge-multiarch ACME_2.34.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL ACME_2.34.0.zip && rm ACME_2.34.0.tar.gz ACME_2.34.0.zip
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install for i386
* installing *source* package 'ACME' ...
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O3 -Wall -std=gnu99 -mtune=generic -c windowChisq.c -o windowChisq.o
windowChisq.c: In function 'windowChisq':
windowChisq.c:58:14: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
firstprobe>0) {
^
windowChisq.c:63:13: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
lastprobe<(na-1)) {
^
windowChisq.c:21:11: warning: unused variable 'xa' [-Wunused-variable]
double *xa,*xlocations,*xchivals;
^
windowChisq.c: At top level:
windowChisq.c:86:5: warning: initialization from incompatible pointer type
{"windowChisq",&windowChisq,5},
^
windowChisq.c:86:5: warning: (near initialization for 'callMethods[0].fun')
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o ACME.dll tmp.def windowChisq.o -LC:/local323/lib/i386 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/ACME.buildbin-libdir/ACME/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'ACME'
finding HTML links ... done
ACMECalcSet-class html
finding level-2 HTML links ... done
ACMESet-class html
aGFF-class html
aGFFCalc-class html
do.aGFF.calc html
example.agff html
findClosestGene html
findRegions html
generics html
getRefflat html
read.resultsGFF html
write.bedGraph html
write.sgr html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'ACME' ...
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O2 -Wall -std=gnu99 -mtune=generic -c windowChisq.c -o windowChisq.o
windowChisq.c: In function 'windowChisq':
windowChisq.c:58:14: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
firstprobe>0) {
^
windowChisq.c:63:13: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
lastprobe<(na-1)) {
^
windowChisq.c:21:11: warning: unused variable 'xa' [-Wunused-variable]
double *xa,*xlocations,*xchivals;
^
windowChisq.c: At top level:
windowChisq.c:86:5: warning: initialization from incompatible pointer type
{"windowChisq",&windowChisq,5},
^
windowChisq.c:86:5: warning: (near initialization for 'callMethods[0].fun')
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o ACME.dll tmp.def windowChisq.o -LC:/local323/lib/x64 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/ACME.buildbin-libdir/ACME/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ACME' as ACME_2.34.0.zip
* DONE (ACME)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'ACME' successfully unpacked and MD5 sums checked
In R CMD INSTALL