BioC 3.5: BUILD BIN report for garfield on oaxaca

Package: garfield

Version: 1.3.0

Command: rm -rf garfield.buildbin-libdir && mkdir garfield.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh garfield_1.3.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R garfield.buildbin-libdir

StartedAt: 2017-03-04 11:25:48 -0800 (Sat, 04 Mar 2017)

EndedAt: 2017-03-04 11:26:10 -0800 (Sat, 04 Mar 2017)

EllapsedTime: 21.9 seconds

RetCode: 0

Status:  OK

PackageFile: garfield_1.3.0.tgz

PackageFileSize: 375.4 KiB

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### Running command:
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###   rm -rf garfield.buildbin-libdir && mkdir garfield.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh garfield_1.3.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R garfield.buildbin-libdir
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=garfield.buildbin-libdir garfield_1.3.0.tar.gz'
>>>>>>> 

* installing *source* package ‘garfield’ ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c garfield_init.c -o garfield_init.o
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c garfield_perm.cpp -o garfield_perm.o
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c garfield_prep.cpp -o garfield_prep.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o garfield.so garfield_init.o garfield_perm.o garfield_prep.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.5-bioc/meat/garfield.buildbin-libdir/garfield/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (garfield)


>>>>>>> 
>>>>>>> FIXING LINKS FOR garfield.buildbin-libdir/garfield/libs//garfield.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgcc_s.1.dylib" "garfield.buildbin-libdir/garfield/libs//garfield.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgfortran.3.dylib" "garfield.buildbin-libdir/garfield/libs//garfield.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.5.2.dylib" "garfield.buildbin-libdir/garfield/libs//garfield.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.dylib" "garfield.buildbin-libdir/garfield/libs//garfield.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libquadmath.0.dylib" "garfield.buildbin-libdir/garfield/libs//garfield.so"