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BioC 3.5: BUILD report for saps on toluca2

This page was generated on 2017-04-23 14:39:24 -0400 (Sun, 23 Apr 2017).

Package 1177/1377HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
saps 2.9.2
Daniel Schmolze
Snapshot Date: 2017-04-22 17:18:01 -0400 (Sat, 22 Apr 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/saps
Last Changed Rev: 125069 / Revision: 129046
Last Changed Date: 2016-12-13 09:32:19 -0500 (Tue, 13 Dec 2016)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  ERROR  skipped 
tokay2 Windows Server 2012 R2 Standard / x64  NotNeeded  ERROR  skipped  skipped 
toluca2 Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded [ ERROR ] skipped  skipped 
veracruz2 OS X 10.11.6 El Capitan / x86_64  NotNeeded  ERROR  skipped  skipped 

Summary

Package: saps
Version: 2.9.2
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data saps
StartedAt: 2017-04-22 21:35:42 -0400 (Sat, 22 Apr 2017)
EndedAt: 2017-04-22 21:35:59 -0400 (Sat, 22 Apr 2017)
EllapsedTime: 17.5 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data saps
###
##############################################################################
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* checking for file ‘saps/DESCRIPTION’ ... OK
* preparing ‘saps’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: survival
Calculating concordance index...done.
Using gene set set1, size = 5
gene set #1 of 2
Calculating P_pure...done.
Calculating P_random...done.
Calculating P_enrichment...Quitting from lines 76-77 (saps.Rmd) 
Error: processing vignette 'saps.Rmd' failed with diagnostics:
incorrect number of dimensions
Execution halted