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BioC 3.5: BUILD BIN report for maanova on oaxaca

This page was generated on 2017-03-04 16:34:29 -0500 (Sat, 04 Mar 2017).

Package 711/1339HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
maanova 1.45.0
Keith Sheppard
Snapshot Date: 2017-03-03 17:15:47 -0500 (Fri, 03 Mar 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/maanova
Last Changed Rev: 122712 / Revision: 127142
Last Changed Date: 2016-10-17 15:10:43 -0400 (Mon, 17 Oct 2016)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
toluca2 Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK [ OK ]

Summary

Package: maanova
Version: 1.45.0
Command: rm -rf maanova.buildbin-libdir && mkdir maanova.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh maanova_1.45.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R maanova.buildbin-libdir
StartedAt: 2017-03-04 11:44:26 -0800 (Sat, 04 Mar 2017)
EndedAt: 2017-03-04 11:44:43 -0800 (Sat, 04 Mar 2017)
EllapsedTime: 17.6 seconds
RetCode: 0
Status:  OK 
PackageFile: maanova_1.45.0.tgz
PackageFileSize: 1.049 MiB

Command output

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###
### Running command:
###
###   rm -rf maanova.buildbin-libdir && mkdir maanova.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh maanova_1.45.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R maanova.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=maanova.buildbin-libdir maanova_1.45.0.tar.gz'
>>>>>>> 

* installing *source* package ‘maanova’ ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c makeratio.c -o makeratio.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c masvd.c -o masvd.o
masvd.c:114:2: warning: '/*' within block comment [-Wcomment]
        /* work on a copy of x */
        ^
masvd.c:154:1: warning: '/*' within block comment [-Wcomment]
/*#ifndef IEEE_754
^
masvd.c:161:5: warning: '/*' within block comment [-Wcomment]
    /* work on a copy of x */
    ^
masvd.c:165:2: warning: '/*' within block comment [-Wcomment]
        /* ask for optimal size of work array */
        ^
masvd.c:189:2: warning: '/*' within block comment [-Wcomment]
        /* ask for optimal size of work array */
        ^
5 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c shift.c -o shift.o
shift.c:27:13: warning: unused variable 'k' [-Wunused-variable]
  int i, j, k;
            ^
1 warning generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c util.c -o util.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o maanova.so makeratio.o masvd.o shift.o util.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2 -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.5-bioc/meat/maanova.buildbin-libdir/maanova/libs
** R
** data
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (maanova)


>>>>>>> 
>>>>>>> FIXING LINKS FOR maanova.buildbin-libdir/maanova/libs//maanova.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgcc_s.1.dylib" "maanova.buildbin-libdir/maanova/libs//maanova.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgfortran.3.dylib" "maanova.buildbin-libdir/maanova/libs//maanova.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.5.2.dylib" "maanova.buildbin-libdir/maanova/libs//maanova.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.dylib" "maanova.buildbin-libdir/maanova/libs//maanova.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libquadmath.0.dylib" "maanova.buildbin-libdir/maanova/libs//maanova.so"