BioC 3.5: BUILD report for flowStats on oaxaca

Package: flowStats

Version: 3.33.1

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data flowStats

StartedAt: 2017-03-03 16:20:37 -0800 (Fri, 03 Mar 2017)

EndedAt: 2017-03-03 16:20:59 -0800 (Fri, 03 Mar 2017)

EllapsedTime: 22.0 seconds

RetCode: 1

Status:  ERROR

PackageFile: None

PackageFileSize: NA

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data flowStats
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* checking for file ‘flowStats/DESCRIPTION’ ... OK
* preparing ‘flowStats’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: flowCore
Loading required package: fda
Loading required package: splines
Loading required package: Matrix

Attaching package: ‘Matrix’

The following object is masked from ‘package:flowCore’:

    %&%


Attaching package: ‘fda’

The following object is masked from ‘package:graphics’:

    matplot

Loading required package: cluster
Loading required package: flowWorkspace
Loading required package: ncdfFlow
Loading required package: RcppArmadillo
Loading required package: BH
Warning in rgl.init(initValue, onlyNULL) :
  RGL: GLX extension missing on server
Warning: 'rgl_init' failed, running with rgl.useNULL = TRUE
Warning: 'workFlow' is deprecated.
Use 'flowWorkspace::GatingSet' instead.
See help("Deprecated")
Warning in ovalues > r[1, ] & ovalues < r[2, ] & !is.na(ovalues) :
  longer object length is not a multiple of shorter object length

Error: processing vignette 'GettingStartedWithFlowStats.Rnw' failed with diagnostics:
 chunk 3 (label = lymphGate) 
Error in x %in% filter : 
  dims [product 9] do not match the length of object [136959]
Execution halted