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This page was generated on 2017-08-16 13:12:45 -0400 (Wed, 16 Aug 2017).
| Package 453/1382 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | |||||
| flowCore 1.42.2 M.Jiang
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | [ WARNINGS ] |  | |||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | |||||
| veracruz2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: flowCore |
| Version: 1.42.2 |
| Command: /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings flowCore_1.42.2.tar.gz |
| StartedAt: 2017-08-15 23:01:54 -0400 (Tue, 15 Aug 2017) |
| EndedAt: 2017-08-15 23:05:09 -0400 (Tue, 15 Aug 2017) |
| EllapsedTime: 194.8 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: flowCore.Rcheck |
| Warnings: 2 |
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###
### Running command:
###
### /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings flowCore_1.42.2.tar.gz
###
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##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.5-bioc/meat/flowCore.Rcheck’
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘flowCore/DESCRIPTION’ ... OK
* this is package ‘flowCore’ version ‘1.42.2’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... NOTE
Found the following apparent object files/libraries:
src/boost_regex/c_regex_traits.o src/boost_regex/cpp_regex_traits.o
src/boost_regex/cregex.o src/boost_regex/fileiter.o
src/boost_regex/icu.o src/boost_regex/instances.o
src/boost_regex/posix_api.o src/boost_regex/regex.o
src/boost_regex/regex_debug.o src/boost_regex/regex_raw_buffer.o
src/boost_regex/regex_traits_defaults.o
src/boost_regex/static_mutex.o src/boost_regex/usinstances.o
src/boost_regex/w32_regex_traits.o src/boost_regex/wc_regex_traits.o
src/boost_regex/wide_posix_api.o src/boost_regex/winstances.o
Object files/libraries should not be included in a source package.
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘flowCore’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 34.2Mb
sub-directories of 1Mb or more:
data 5.0Mb
extdata 1.1Mb
lib 20.5Mb
libs 5.6Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Versioned 'LinkingTo' value for ‘BH’ is only usable in R >= 3.0.2
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' call to ‘Rgraphviz’ in package code.
Please use :: or requireNamespace() instead.
See section 'Suggested packages' in the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
rbind2,flowSet-flowSet: warning in assign(i, x[[i]], env = env):
partial argument match of 'env' to 'envir'
rbind2,flowSet-flowSet: warning in assign(i, y[[i]], env = env):
partial argument match of 'env' to 'envir'
%in%,flowFrame-norm2Filter: no visible global function definition for
‘cov.rob’
spillover,flowSet: no visible global function definition for
‘devAskNewPage’
spillover,flowSet : <anonymous>: no visible global function definition
for ‘rangeGate’
spillover,flowSet : <anonymous>: no visible global function definition
for ‘density’
spillover,flowSet : <anonymous>: no visible global function definition
for ‘abline’
spillover,flowSet : <anonymous> : <anonymous>: no visible global
function definition for ‘density’
split,flowFrame-factor: no visible binding for global variable ‘i’
summary,workFlow: no visible binding for global variable ‘wf’
Undefined global functions or variables:
abline cov.rob density devAskNewPage i rangeGate wf
Consider adding
importFrom("grDevices", "devAskNewPage")
importFrom("graphics", "abline")
importFrom("stats", "density")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... WARNING
Codoc mismatches from documentation object 'read.flowSet':
read.flowSet
Code: function(files = NULL, path = ".", pattern = NULL, phenoData,
descriptions, name.keyword, alter.names = FALSE,
transformation = "linearize", which.lines = NULL,
column.pattern = NULL, invert.pattern = FALSE, decades
= 0, sep = "\t", as.is = TRUE, name, ncdf = FALSE,
dataset = NULL, min.limit = NULL, truncate_max_range =
TRUE, emptyValue = TRUE, ignore.text.offset = FALSE,
...)
Docs: function(files = NULL, path = ".", pattern = NULL, phenoData,
descriptions, name.keyword, alter.names = FALSE,
transformation = "linearize", which.lines = NULL,
column.pattern = NULL, invert.pattern = FALSE, decades
= 0, sep = "\t", as.is = TRUE, name, ncdf = FALSE,
dataset = NULL, min.limit = NULL, emptyValue = TRUE,
ignore.text.offset = FALSE, ...)
Argument names in code not in docs:
truncate_max_range
Mismatches in argument names:
Position: 19 Code: truncate_max_range Docs: emptyValue
Position: 20 Code: emptyValue Docs: ignore.text.offset
Position: 21 Code: ignore.text.offset Docs: ...
* checking Rd \usage sections ... WARNING
Documented arguments not in \usage in documentation object 'read.flowSet':
‘truncate_max_range’
Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... NOTE
GNU make is a SystemRequirements.
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 WARNINGs, 6 NOTEs
See
‘/home/biocbuild/bbs-3.5-bioc/meat/flowCore.Rcheck/00check.log’
for details.
flowCore.Rcheck/00install.out:
* installing *source* package ‘flowCore’ ... ** libs g++ -std=gnu++11 -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG -I../inst/include/ -I"/home/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.5-bioc/R/library/BH/include" -I/usr/local/include -fpic -g -O2 -c FastLogicle.cpp -o FastLogicle.o g++ -std=gnu++11 -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG -I../inst/include/ -I"/home/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.5-bioc/R/library/BH/include" -I/usr/local/include -fpic -g -O2 -c Hyperlog.cpp -o Hyperlog.o g++ -std=gnu++11 -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG -I../inst/include/ -I"/home/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.5-bioc/R/library/BH/include" -I/usr/local/include -fpic -g -O2 -c Logicle.cpp -o Logicle.o g++ -std=gnu++11 -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG -I../inst/include/ -I"/home/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.5-bioc/R/library/BH/include" -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG -I../inst/include/ -I"/home/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.5-bioc/R/library/BH/include" -I/usr/local/include -fpic -g -O2 -c biexponential.cpp -o biexponential.o g++ -std=gnu++11 -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG -I../inst/include/ -I"/home/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.5-bioc/R/library/BH/include" -I/usr/local/include -fpic -g -O2 -c convertRawBytes.cpp -o convertRawBytes.o g++ -std=gnu++11 -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG -I../inst/include/ -I"/home/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.5-bioc/R/library/BH/include" -I/usr/local/include -fpic -g -O2 -c fcsTextParse.cpp -o fcsTextParse.o g++ -std=gnu++11 -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG -I../inst/include/ -I"/home/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.5-bioc/R/library/BH/include" -I/usr/local/include -fpic -g -O2 -c hyperlogTransform.cpp -o hyperlogTransform.o g++ -std=gnu++11 -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG -I../inst/include/ -I"/home/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.5-bioc/R/library/BH/include" -I/usr/local/include -fpic -g -O2 -c inPolygon.cpp -o inPolygon.o g++ -std=gnu++11 -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG -I../inst/include/ -I"/home/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.5-bioc/R/library/BH/include" -I/usr/local/include -fpic -g -O2 -c inPolytope.cpp -o inPolytope.o g++ -std=gnu++11 -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG -I../inst/include/ -I"/home/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.5-bioc/R/library/BH/include" -I/usr/local/include -fpic -g -O2 -c logicleTransform.cpp -o logicleTransform.o g++ -std=gnu++11 -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG -I../inst/include/ -I"/home/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.5-bioc/R/library/BH/include" -I/usr/local/include -fpic -g -O2 -c pairVectorRcppWrap.cpp -o pairVectorRcppWrap.o g++ -std=gnu++11 -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG -I../inst/include/ -I"/home/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.5-bioc/R/library/BH/include" -I/usr/local/include -fpic -g -O2 -c sortBytes.cpp -o sortBytes.o g++ -std=gnu++11 -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG -I../inst/include/ -I"/home/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.5-bioc/R/library/BH/include" -I/usr/local/include -fpic -g -O2 -c uint2double.cpp -o uint2double.o g++ -std=gnu++11 -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG -I../inst/include/ -I"/home/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.5-bioc/R/library/BH/include" -I/usr/local/include -fpic -g -O2 -c zeroin.cpp -o zeroin.o g++ -std=gnu++11 -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG -I../inst/include/ -I"/home/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.5-bioc/R/library/BH/include" -I/usr/local/include -fpic -g -O2 -c boost_regex/regex_traits_defaults.cpp -o boost_regex/regex_traits_defaults.o g++ -std=gnu++11 -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG -I../inst/include/ -I"/home/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.5-bioc/R/library/BH/include" -I/usr/local/include -fpic -g -O2 -c boost_regex/cpp_regex_traits.cpp -o boost_regex/cpp_regex_traits.o g++ -std=gnu++11 -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG -I../inst/include/ -I"/home/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.5-bioc/R/library/BH/include" -I/usr/local/include -fpic -g -O2 -c boost_regex/usinstances.cpp -o boost_regex/usinstances.o g++ -std=gnu++11 -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG -I../inst/include/ -I"/home/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.5-bioc/R/library/BH/include" -I/usr/local/include -fpic -g -O2 -c boost_regex/icu.cpp -o boost_regex/icu.o g++ -std=gnu++11 -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG -I../inst/include/ -I"/home/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.5-bioc/R/library/BH/include" -I/usr/local/include -fpic -g -O2 -c boost_regex/fileiter.cpp -o boost_regex/fileiter.o g++ -std=gnu++11 -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG -I../inst/include/ -I"/home/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.5-bioc/R/library/BH/include" -I/usr/local/include -fpic -g -O2 -c boost_regex/regex.cpp -o boost_regex/regex.o g++ -std=gnu++11 -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG -I../inst/include/ -I"/home/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.5-bioc/R/library/BH/include" -I/usr/local/include -fpic -g -O2 -c boost_regex/posix_api.cpp -o boost_regex/posix_api.o g++ -std=gnu++11 -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG -I../inst/include/ -I"/home/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.5-bioc/R/library/BH/include" -I/usr/local/include -fpic -g -O2 -c boost_regex/wide_posix_api.cpp -o boost_regex/wide_posix_api.o g++ -std=gnu++11 -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG -I../inst/include/ -I"/home/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.5-bioc/R/library/BH/include" -I/usr/local/include -fpic -g -O2 -c boost_regex/winstances.cpp -o boost_regex/winstances.o g++ -std=gnu++11 -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG -I../inst/include/ -I"/home/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.5-bioc/R/library/BH/include" -I/usr/local/include -fpic -g -O2 -c boost_regex/w32_regex_traits.cpp -o boost_regex/w32_regex_traits.o g++ -std=gnu++11 -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG -I../inst/include/ -I"/home/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.5-bioc/R/library/BH/include" -I/usr/local/include -fpic -g -O2 -c boost_regex/cregex.cpp -o boost_regex/cregex.o g++ -std=gnu++11 -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG -I../inst/include/ -I"/home/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.5-bioc/R/library/BH/include" -I/usr/local/include -fpic -g -O2 -c boost_regex/c_regex_traits.cpp -o boost_regex/c_regex_traits.o g++ -std=gnu++11 -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG -I../inst/include/ -I"/home/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.5-bioc/R/library/BH/include" -I/usr/local/include -fpic -g -O2 -c boost_regex/wc_regex_traits.cpp -o boost_regex/wc_regex_traits.o g++ -std=gnu++11 -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG -I../inst/include/ -I"/home/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.5-bioc/R/library/BH/include" -I/usr/local/include -fpic -g -O2 -c boost_regex/instances.cpp -o boost_regex/instances.o g++ -std=gnu++11 -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG -I../inst/include/ -I"/home/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.5-bioc/R/library/BH/include" -I/usr/local/include -fpic -g -O2 -c boost_regex/regex_debug.cpp -o boost_regex/regex_debug.o g++ -std=gnu++11 -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG -I../inst/include/ -I"/home/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.5-bioc/R/library/BH/include" -I/usr/local/include -fpic -g -O2 -c boost_regex/static_mutex.cpp -o boost_regex/static_mutex.o g++ -std=gnu++11 -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG -I../inst/include/ -I"/home/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.5-bioc/R/library/BH/include" -I/usr/local/include -fpic -g -O2 -c boost_regex/regex_raw_buffer.cpp -o boost_regex/regex_raw_buffer.o mkdir -p "/home/biocbuild/bbs-3.5-bioc/meat/flowCore.Rcheck/flowCore/lib" ar rs "/home/biocbuild/bbs-3.5-bioc/meat/flowCore.Rcheck/flowCore/lib/libboost_regex.a" boost_regex/regex_traits_defaults.o boost_regex/cpp_regex_traits.o boost_regex/usinstances.o boost_regex/icu.o boost_regex/fileiter.o boost_regex/regex.o boost_regex/posix_api.o boost_regex/wide_posix_api.o boost_regex/winstances.o boost_regex/w32_regex_traits.o boost_regex/cregex.o boost_regex/c_regex_traits.o boost_regex/wc_regex_traits.o boost_regex/instances.o boost_regex/regex_debug.o boost_regex/static_mutex.o boost_regex/regex_raw_buffer.o ar: creating /home/biocbuild/bbs-3.5-bioc/meat/flowCore.Rcheck/flowCore/lib/libboost_regex.a g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.5-bioc/R/lib -L/usr/local/lib -o flowCore.so FastLogicle.o Hyperlog.o Logicle.o RcppExports.o biexponential.o convertRawBytes.o fcsTextParse.o hyperlogTransform.o inPolygon.o inPolytope.o logicleTransform.o pairVectorRcppWrap.o sortBytes.o uint2double.o zeroin.o /home/biocbuild/bbs-3.5-bioc/meat/flowCore.Rcheck/flowCore/lib/libboost_regex.a -L/home/biocbuild/bbs-3.5-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.5-bioc/meat/flowCore.Rcheck/flowCore/libs ** R ** data ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (flowCore)
flowCore.Rcheck/flowCore-Ex.timings:
| name | user | system | elapsed | |
| EHtrans-class | 0.096 | 0.000 | 0.097 | |
| FCSTransTransform | 1.100 | 0.112 | 1.215 | |
| Subset-methods | 0.700 | 0.000 | 0.701 | |
| actionItem-class | 0.000 | 0.000 | 0.001 | |
| arcsinhTransform | 0.080 | 0.000 | 0.081 | |
| asinht-class | 0.016 | 0.000 | 0.020 | |
| asinhtGml2-class | 0.020 | 0.000 | 0.024 | |
| biexponentialTransform | 3.428 | 0.076 | 3.510 | |
| boundaryFilter-class | 0.052 | 0.000 | 0.055 | |
| characterOrTransformation-class | 0.000 | 0.000 | 0.001 | |
| coerce | 0.044 | 0.000 | 0.044 | |
| compensateActionItem-class | 0.004 | 0.000 | 0.001 | |
| compensateView-class | 0.000 | 0.000 | 0.001 | |
| compensatedParameter-class | 0.2 | 0.0 | 0.2 | |
| compensation-class | 0.356 | 0.004 | 0.357 | |
| dg1polynomial-class | 0.016 | 0.000 | 0.017 | |
| each_col-methods | 0.020 | 0.000 | 0.021 | |
| ellipsoidGate | 0.068 | 0.000 | 0.068 | |
| exponential-class | 0.020 | 0.000 | 0.019 | |
| expressionFilter-class | 0.076 | 0.000 | 0.073 | |
| fcReference-class | 0.000 | 0.000 | 0.001 | |
| filter-methods | 0.608 | 0.076 | 0.683 | |
| filter-on-methods | 0.068 | 0.000 | 0.066 | |
| filterList-class | 0.016 | 0.000 | 0.015 | |
| filterResult-class | 0.000 | 0.000 | 0.001 | |
| filterResultList-class | 0.000 | 0.000 | 0.001 | |
| filterSummary-class | 0 | 0 | 0 | |
| filterSummaryList-class | 0.000 | 0.000 | 0.001 | |
| flowFrame-class | 2.552 | 0.088 | 2.640 | |
| flowSet-class | 1.828 | 0.100 | 1.930 | |
| fsApply | 0.088 | 0.000 | 0.089 | |
| gateActionItem-class | 0.004 | 0.000 | 0.001 | |
| gateView-class | 0 | 0 | 0 | |
| getIndexSort-methods | 0.016 | 0.000 | 0.016 | |
| hyperlog-class | 1.184 | 0.000 | 1.182 | |
| hyperlogtGml2-class | 0.024 | 0.000 | 0.023 | |
| identifier-methods | 0.016 | 0.000 | 0.017 | |
| inverseLogicleTransform | 0.504 | 0.076 | 0.581 | |
| invsplitscale-class | 0.016 | 0.000 | 0.017 | |
| keyword-methods | 0.544 | 0.072 | 0.614 | |
| kmeansFilter | 0.144 | 0.000 | 0.142 | |
| linearTransform | 0.024 | 0.000 | 0.025 | |
| lintGml2-class | 0.020 | 0.000 | 0.018 | |
| lnTransform | 0.968 | 0.076 | 1.043 | |
| logTransform | 0.024 | 0.000 | 0.026 | |
| logarithm-class | 0.028 | 0.000 | 0.028 | |
| logicalFilterResult-class | 0.000 | 0.000 | 0.001 | |
| logicleTransform | 0.704 | 0.084 | 0.789 | |
| logicletGml2-class | 0.036 | 0.000 | 0.037 | |
| logtGml2-class | 0.016 | 0.000 | 0.018 | |
| manyFilterResult-class | 0.000 | 0.000 | 0.001 | |
| markernames | 0.496 | 0.072 | 0.570 | |
| multipleFilterResult-class | 0.000 | 0.000 | 0.001 | |
| norm2Filter-class | 0.116 | 0.000 | 0.117 | |
| normalizeActionItem-class | 0 | 0 | 0 | |
| normalizeView-class | 0.004 | 0.000 | 0.001 | |
| parameters-methods | 0.016 | 0.000 | 0.017 | |
| polygonGate | 0.032 | 0.004 | 0.035 | |
| quadGate | 0.124 | 0.004 | 0.130 | |
| quadratic-class | 0.016 | 0.000 | 0.017 | |
| quadraticTransform | 0.02 | 0.00 | 0.02 | |
| ratio-class | 0.024 | 0.000 | 0.022 | |
| ratiotGml2-class | 0.016 | 0.000 | 0.015 | |
| read.FCS | 0.032 | 0.000 | 0.032 | |
| read.FCSheader | 0.016 | 0.000 | 0.015 | |
| read.flowSet | 0.06 | 0.00 | 0.06 | |
| rectangleGate | 0.064 | 0.000 | 0.066 | |
| sampleFilter-class | 0.032 | 0.000 | 0.031 | |
| scaleTransform | 0.024 | 0.000 | 0.022 | |
| singleParameterTransform-class | 0.000 | 0.000 | 0.001 | |
| sinht-class | 0.016 | 0.000 | 0.018 | |
| split-methods | 0.964 | 0.096 | 1.059 | |
| splitScaleTransform | 0.904 | 0.096 | 1.000 | |
| splitscale-class | 0.020 | 0.000 | 0.019 | |
| squareroot-class | 0.02 | 0.00 | 0.02 | |
| subsettingActionItem-class | 0.000 | 0.000 | 0.001 | |
| subsettingView-class | 0.004 | 0.000 | 0.001 | |
| timeFilter-class | 1.404 | 0.084 | 1.491 | |
| transform-class | 0.000 | 0.000 | 0.002 | |
| transformActionItem-class | 0.000 | 0.000 | 0.001 | |
| transformFilter-class | 0.120 | 0.004 | 0.125 | |
| transformList-class | 0.528 | 0.076 | 0.607 | |
| transformMap-class | 0.000 | 0.000 | 0.001 | |
| transformView-class | 0.000 | 0.000 | 0.001 | |
| truncateTransform | 0.024 | 0.000 | 0.022 | |
| unitytransform-class | 0.016 | 0.000 | 0.015 | |
| view-class | 0.000 | 0.000 | 0.001 | |
| workFlow-class | 0.004 | 0.000 | 0.001 | |
| write.FCS | 0.064 | 0.000 | 0.064 | |
| write.flowSet | 0.976 | 0.084 | 1.061 | |