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This page was generated on 2017-08-16 13:17:44 -0400 (Wed, 16 Aug 2017).
| Package 326/1382 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | |||||
| DeepBlueR 1.2.10 Felipe Albrecht
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | [ OK ] |  | |||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | OK | OK | | |||||
| veracruz2 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | |
| Package: DeepBlueR |
| Version: 1.2.10 |
| Command: /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings DeepBlueR_1.2.10.tar.gz |
| StartedAt: 2017-08-15 22:26:26 -0400 (Tue, 15 Aug 2017) |
| EndedAt: 2017-08-15 22:30:38 -0400 (Tue, 15 Aug 2017) |
| EllapsedTime: 251.9 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: DeepBlueR.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings DeepBlueR_1.2.10.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.5-bioc/meat/DeepBlueR.Rcheck’
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘DeepBlueR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘DeepBlueR’ version ‘1.2.10’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘DeepBlueR’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
deepblue_batch_export_results 1.788 0.016 5.756
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
DeepBlueR.Rcheck/00install.out:
* installing *source* package ‘DeepBlueR’ ... ** R ** demo ** inst ** preparing package for lazy loading Called method: deepblue_list_column_types Reported status was: okay Called method: deepblue_info Reported status was: okay ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (DeepBlueR)
DeepBlueR.Rcheck/DeepBlueR-Ex.timings:
| name | user | system | elapsed | |
| deepblue_aggregate | 0.732 | 0.012 | 1.596 | |
| deepblue_batch_export_results | 1.788 | 0.016 | 5.756 | |
| deepblue_binning | 0.040 | 0.008 | 0.960 | |
| deepblue_cache_status | 0.004 | 0.000 | 0.004 | |
| deepblue_cancel_request | 0.016 | 0.004 | 0.294 | |
| deepblue_chromosomes | 0.076 | 0.008 | 0.374 | |
| deepblue_clear_cache | 0.004 | 0.000 | 0.002 | |
| deepblue_collection_experiments_count | 0.048 | 0.004 | 0.357 | |
| deepblue_commands | 0.108 | 0.008 | 1.077 | |
| deepblue_count_gene_ontology_terms | 0.104 | 0.000 | 0.707 | |
| deepblue_count_regions | 0.036 | 0.000 | 0.966 | |
| deepblue_coverage | 0.036 | 0.000 | 0.921 | |
| deepblue_delete_request_from_cache | 0.004 | 0.000 | 0.004 | |
| deepblue_diff | 0.464 | 0.000 | 1.081 | |
| deepblue_distinct_column_values | 0.044 | 0.000 | 0.904 | |
| deepblue_download_request_data | 0.996 | 0.004 | 3.036 | |
| deepblue_echo | 0.016 | 0.000 | 0.287 | |
| deepblue_enrich_region_overlap | 0.844 | 0.004 | 4.806 | |
| deepblue_enrich_regions_go_terms | 0.100 | 0.004 | 1.262 | |
| deepblue_export_bed | 0.344 | 0.004 | 2.912 | |
| deepblue_export_meta_data | 0.212 | 0.000 | 0.659 | |
| deepblue_export_tab | 0.108 | 0.000 | 1.583 | |
| deepblue_extend | 0.056 | 0.000 | 0.602 | |
| deepblue_extract_ids | 0.000 | 0.000 | 0.001 | |
| deepblue_extract_names | 0.000 | 0.000 | 0.001 | |
| deepblue_faceting_experiments | 0.032 | 0.000 | 0.367 | |
| deepblue_filter_regions | 0.032 | 0.000 | 0.335 | |
| deepblue_find_motif | 0.032 | 0.000 | 0.277 | |
| deepblue_flank | 0.056 | 0.000 | 0.603 | |
| deepblue_get_biosource_children | 0.040 | 0.000 | 0.284 | |
| deepblue_get_biosource_parents | 0.016 | 0.000 | 0.260 | |
| deepblue_get_biosource_related | 0.020 | 0.000 | 0.306 | |
| deepblue_get_biosource_synonyms | 0.020 | 0.000 | 0.293 | |
| deepblue_get_experiments_by_query | 0.060 | 0.000 | 0.318 | |
| deepblue_get_regions | 0.048 | 0.000 | 0.988 | |
| deepblue_get_request_data | 0.12 | 0.00 | 1.53 | |
| deepblue_info | 0.044 | 0.000 | 0.325 | |
| deepblue_input_regions | 0.020 | 0.000 | 0.464 | |
| deepblue_intersection | 0.068 | 0.004 | 1.077 | |
| deepblue_is_biosource | 0.020 | 0.000 | 0.258 | |
| deepblue_liftover | 0.576 | 0.036 | 3.449 | |
| deepblue_list_annotations | 0.032 | 0.000 | 0.305 | |
| deepblue_list_biosources | 0.020 | 0.004 | 0.294 | |
| deepblue_list_cached_requests | 0.004 | 0.000 | 0.003 | |
| deepblue_list_column_types | 0.368 | 0.000 | 0.722 | |
| deepblue_list_epigenetic_marks | 0.412 | 0.000 | 1.119 | |
| deepblue_list_experiments | 0.072 | 0.000 | 0.328 | |
| deepblue_list_expressions | 0.228 | 0.000 | 0.732 | |
| deepblue_list_gene_models | 0.020 | 0.000 | 0.261 | |
| deepblue_list_genes | 0.284 | 0.000 | 1.380 | |
| deepblue_list_genomes | 0.016 | 0.000 | 0.257 | |
| deepblue_list_in_use | 0.312 | 0.000 | 1.313 | |
| deepblue_list_projects | 0.016 | 0.000 | 0.260 | |
| deepblue_list_recent_experiments | 0.032 | 0.000 | 0.277 | |
| deepblue_list_requests | 0.016 | 0.000 | 0.259 | |
| deepblue_list_samples | 0.108 | 0.004 | 0.709 | |
| deepblue_list_similar_biosources | 0.028 | 0.000 | 1.075 | |
| deepblue_list_similar_epigenetic_marks | 0.020 | 0.000 | 0.311 | |
| deepblue_list_similar_experiments | 0.016 | 0.000 | 1.656 | |
| deepblue_list_similar_genomes | 0.020 | 0.000 | 0.261 | |
| deepblue_list_similar_projects | 0.016 | 0.000 | 0.292 | |
| deepblue_list_similar_techniques | 0.020 | 0.000 | 0.298 | |
| deepblue_list_techniques | 0.032 | 0.000 | 0.310 | |
| deepblue_merge_queries | 0.072 | 0.000 | 0.830 | |
| deepblue_meta_data_to_table | 0.336 | 0.000 | 0.938 | |
| deepblue_name_to_id | 0.096 | 0.004 | 0.890 | |
| deepblue_overlap | 0.080 | 0.004 | 0.840 | |
| deepblue_preview_experiment | 0.020 | 0.000 | 0.283 | |
| deepblue_query_cache | 0.128 | 0.000 | 1.178 | |
| deepblue_query_experiment_type | 0.056 | 0.000 | 1.321 | |
| deepblue_reset_options | 0 | 0 | 0 | |
| deepblue_score_matrix | 0.112 | 0.000 | 1.062 | |
| deepblue_search | 0.064 | 0.000 | 0.623 | |
| deepblue_select_annotations | 0.032 | 0.000 | 0.272 | |
| deepblue_select_column | 0.536 | 0.000 | 1.402 | |
| deepblue_select_experiments | 0.020 | 0.000 | 0.261 | |
| deepblue_select_expressions | 0.032 | 0.000 | 0.378 | |
| deepblue_select_genes | 0.032 | 0.000 | 0.375 | |
| deepblue_select_regions | 0.076 | 0.000 | 0.867 | |
| deepblue_tiling_regions | 0.024 | 0.000 | 0.270 | |