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BioC 3.5: BUILD BIN report for CNVtools on toluca2

This page was generated on 2017-04-23 14:35:00 -0400 (Sun, 23 Apr 2017).

Package 253/1377HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CNVtools 1.69.1
Chris Barnes
Snapshot Date: 2017-04-22 17:18:01 -0400 (Sat, 22 Apr 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/CNVtools
Last Changed Rev: 124491 / Revision: 129046
Last Changed Date: 2016-11-27 17:45:03 -0500 (Sun, 27 Nov 2016)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
toluca2 Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  WARNINGS [ OK ]
veracruz2 OS X 10.11.6 El Capitan / x86_64  NotNeeded  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: CNVtools
Version: 1.69.1
Command: rm -rf CNVtools.buildbin-libdir && mkdir CNVtools.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh CNVtools_1.69.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CNVtools.buildbin-libdir
StartedAt: 2017-04-23 11:49:30 -0400 (Sun, 23 Apr 2017)
EndedAt: 2017-04-23 11:49:44 -0400 (Sun, 23 Apr 2017)
EllapsedTime: 13.1 seconds
RetCode: 0
Status:  OK 
PackageFile: CNVtools_1.69.1.tgz
PackageFileSize: 869.7 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf CNVtools.buildbin-libdir && mkdir CNVtools.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh CNVtools_1.69.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CNVtools.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=CNVtools.buildbin-libdir CNVtools_1.69.1.tar.gz'
>>>>>>> 

* installing *source* package ‘CNVtools’ ...
** libs
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c fitmodel.cpp -o fitmodel.o
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c glm_test.cpp -o glm_test.o
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c mla.cpp -o mla.o
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c routine.cpp -o routine.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c zeroin.c -o zeroin.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o CNVtools.so fitmodel.o glm_test.o mla.o routine.o zeroin.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.5-bioc/meat/CNVtools.buildbin-libdir/CNVtools/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (CNVtools)


>>>>>>> 
>>>>>>> FIXING LINKS FOR CNVtools.buildbin-libdir/CNVtools/libs//CNVtools.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgcc_s.1.dylib" "CNVtools.buildbin-libdir/CNVtools/libs//CNVtools.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgfortran.3.dylib" "CNVtools.buildbin-libdir/CNVtools/libs//CNVtools.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.5.2.dylib" "CNVtools.buildbin-libdir/CNVtools/libs//CNVtools.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.dylib" "CNVtools.buildbin-libdir/CNVtools/libs//CNVtools.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libquadmath.0.dylib" "CNVtools.buildbin-libdir/CNVtools/libs//CNVtools.so"