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BioC 3.3: BUILD report for RamiGO on windows2.bioconductor.org

This page was generated on 2015-10-27 12:14:51 -0400 (Tue, 27 Oct 2015).

Package 836/1104HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RamiGO 1.17.0
Markus Schroeder
Snapshot Date: 2015-10-26 20:20:04 -0400 (Mon, 26 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/RamiGO
Last Changed Rev: 109592 / Revision: 109948
Last Changed Date: 2015-10-13 15:59:53 -0400 (Tue, 13 Oct 2015)
linux2.bioconductor.org Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  ERROR  skipped 
windows2.bioconductor.org Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64  NotNeeded [ ERROR ] skipped  skipped 

Summary

Package: RamiGO
Version: 1.17.0
Command: chmod a+r RamiGO -R && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data RamiGO
StartedAt: 2015-10-26 22:04:51 -0400 (Mon, 26 Oct 2015)
EndedAt: 2015-10-26 22:05:06 -0400 (Mon, 26 Oct 2015)
EllapsedTime: 15.5 seconds
RetCode: 1
Status:  ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   chmod a+r RamiGO -R && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data RamiGO
###
##############################################################################
##############################################################################


* checking for file 'RamiGO/DESCRIPTION' ... OK
* preparing 'RamiGO':
* checking DESCRIPTION meta-information ... OK
* installing the package to process help pages
* building the PDF package manual
Hmm ... looks like a package
Converting Rd files to LaTeX .
Creating pdf output from LaTeX ...
Saving output to 'c:/biocbld/bbs-3.3-bioc/tmpdir/RtmpMHAiCE/Rbuildd0c35153131/RamiGO/build/RamiGO.pdf' ...
Done
* creating vignettes ...Warning: running command '"c:/biocbld/bbs-3.3-bioc/R/bin/x64/Rscript" --vanilla --default-packages= -e "tools::buildVignettes(dir = '.', tangle = TRUE)"' had status 1
 ERROR
Loading required package: gsubfn
Loading required package: proto

Error: processing vignette 'RamiGO.Rnw' failed with diagnostics:
 chunk 5 (label = getAmigoTreeDOT) 
Error in `[<-`(`*tmp*`, relations[i, "parent"], relations[i, "child"],  : 
  subscript out of bounds
Execution halted