| Back to Build/check report for BioC 3.24: simplified long |
|
This page was generated on 2026-05-16 11:33 -0400 (Sat, 16 May 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4894 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1015/2375 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HPiP 1.19.0 (landing page) Matineh Rahmatbakhsh
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
| See other builds for HPiP in R Universe. | ||||||||||||||
|
To the developers/maintainers of the HPiP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: HPiP |
| Version: 1.19.0 |
| Command: /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.24-bioc/R/site-library --timings HPiP_1.19.0.tar.gz |
| StartedAt: 2026-05-16 00:49:23 -0400 (Sat, 16 May 2026) |
| EndedAt: 2026-05-16 01:04:30 -0400 (Sat, 16 May 2026) |
| EllapsedTime: 907.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HPiP.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.24-bioc/R/site-library --timings HPiP_1.19.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.24-bioc/meat/HPiP.Rcheck’
* using R version 4.6.0 RC (2026-04-17 r89917)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0
* running under: Ubuntu 24.04.4 LTS
* using session charset: UTF-8
* current time: 2026-05-16 04:49:24 UTC
* checking for file ‘HPiP/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HPiP’ version ‘1.19.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HPiP’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License stub is invalid DCF.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) getHPI.Rd:29: Lost braces
29 | then the Kronecker product is the code{(pm × qn)} block matrix
| ^
* checking Rd metadata ... OK
* checking Rd cross-references ... INFO
Package unavailable to check Rd xrefs: ‘ftrCOOL’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
corr_plot 35.298 0.400 35.701
FSmethod 34.899 0.448 35.432
var_imp 34.368 0.564 34.933
pred_ensembel 12.780 0.220 11.713
enrichfindP 0.569 0.041 12.572
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/home/biocbuild/bbs-3.24-bioc/meat/HPiP.Rcheck/00check.log’
for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.24-bioc/R/site-library’ * installing *source* package ‘HPiP’ ... ** this is package ‘HPiP’ version ‘1.19.0’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R version 4.6.0 RC (2026-04-17 r89917) -- "Because it was There"
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage('HPiP')
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
avNNet
Loading required package: ggplot2
Loading required package: lattice
Fitting Repeat 1
# weights: 103
initial value 100.784056
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 95.733065
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 95.036697
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 103.094694
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 103.483547
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 106.361728
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 103.178226
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 107.255987
iter 10 value 93.565089
final value 93.561853
converged
Fitting Repeat 4
# weights: 305
initial value 116.535519
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 104.429780
final value 94.088889
converged
Fitting Repeat 1
# weights: 507
initial value 114.091208
final value 94.484211
converged
Fitting Repeat 2
# weights: 507
initial value 112.167002
final value 94.484211
converged
Fitting Repeat 3
# weights: 507
initial value 97.618282
final value 94.484211
converged
Fitting Repeat 4
# weights: 507
initial value 109.519832
iter 10 value 94.228678
iter 10 value 94.228678
iter 10 value 94.228678
final value 94.228678
converged
Fitting Repeat 5
# weights: 507
initial value 101.705567
final value 94.484211
converged
Fitting Repeat 1
# weights: 103
initial value 99.552141
iter 10 value 94.458475
iter 20 value 87.985821
iter 30 value 86.427615
iter 40 value 86.015837
iter 50 value 84.961429
iter 60 value 84.747009
final value 84.740023
converged
Fitting Repeat 2
# weights: 103
initial value 111.881666
iter 10 value 94.351514
iter 20 value 91.470695
iter 30 value 87.731770
iter 40 value 85.778673
iter 50 value 84.901709
iter 60 value 84.728136
iter 70 value 84.721830
final value 84.721790
converged
Fitting Repeat 3
# weights: 103
initial value 110.168654
iter 10 value 94.439781
iter 20 value 86.455788
iter 30 value 85.471118
iter 40 value 85.447509
iter 50 value 84.860843
iter 60 value 84.767109
iter 70 value 84.740501
final value 84.740023
converged
Fitting Repeat 4
# weights: 103
initial value 99.417997
iter 10 value 94.489813
iter 20 value 93.618305
iter 30 value 88.135124
iter 40 value 85.434901
iter 50 value 85.284577
iter 60 value 84.453198
iter 70 value 84.395727
final value 84.395715
converged
Fitting Repeat 5
# weights: 103
initial value 97.923728
iter 10 value 94.325022
iter 20 value 93.690325
iter 30 value 91.308681
iter 40 value 85.636526
iter 50 value 83.881913
iter 60 value 82.944000
iter 70 value 82.319245
iter 80 value 82.237256
iter 90 value 82.190974
iter 100 value 82.188201
final value 82.188201
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 114.166647
iter 10 value 96.570544
iter 20 value 94.610542
iter 30 value 94.412520
iter 40 value 93.643808
iter 50 value 92.800677
iter 60 value 88.607309
iter 70 value 87.495246
iter 80 value 86.702996
iter 90 value 85.440749
iter 100 value 85.174448
final value 85.174448
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 101.231668
iter 10 value 93.853738
iter 20 value 90.047626
iter 30 value 87.979341
iter 40 value 84.430052
iter 50 value 83.315251
iter 60 value 82.709077
iter 70 value 82.245112
iter 80 value 81.661460
iter 90 value 81.585782
iter 100 value 81.506113
final value 81.506113
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 106.251592
iter 10 value 94.632045
iter 20 value 93.759442
iter 30 value 88.896150
iter 40 value 87.166286
iter 50 value 86.396091
iter 60 value 85.396363
iter 70 value 85.208482
iter 80 value 84.961094
iter 90 value 84.226864
iter 100 value 82.103964
final value 82.103964
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 103.262710
iter 10 value 94.494648
iter 20 value 93.393937
iter 30 value 90.384625
iter 40 value 88.703002
iter 50 value 88.266901
iter 60 value 86.898952
iter 70 value 86.006839
iter 80 value 83.590394
iter 90 value 81.640231
iter 100 value 81.170232
final value 81.170232
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 106.709529
iter 10 value 94.865983
iter 20 value 93.658062
iter 30 value 90.200797
iter 40 value 87.508615
iter 50 value 86.679510
iter 60 value 85.258944
iter 70 value 84.298786
iter 80 value 83.804256
iter 90 value 81.915493
iter 100 value 81.833358
final value 81.833358
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 110.390458
iter 10 value 96.390339
iter 20 value 92.470031
iter 30 value 91.624296
iter 40 value 89.010185
iter 50 value 85.827793
iter 60 value 84.948518
iter 70 value 83.332190
iter 80 value 81.630789
iter 90 value 81.325768
iter 100 value 81.239884
final value 81.239884
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 122.596647
iter 10 value 99.353271
iter 20 value 91.982674
iter 30 value 89.650225
iter 40 value 87.332230
iter 50 value 86.075130
iter 60 value 85.697711
iter 70 value 84.670203
iter 80 value 82.862908
iter 90 value 82.131138
iter 100 value 81.277684
final value 81.277684
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 108.569212
iter 10 value 95.181426
iter 20 value 93.534659
iter 30 value 86.567377
iter 40 value 85.795532
iter 50 value 83.669272
iter 60 value 81.486279
iter 70 value 81.341675
iter 80 value 81.010683
iter 90 value 80.682342
iter 100 value 80.382847
final value 80.382847
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 128.945810
iter 10 value 94.976416
iter 20 value 93.904470
iter 30 value 90.556566
iter 40 value 86.704142
iter 50 value 83.813261
iter 60 value 82.707521
iter 70 value 81.712311
iter 80 value 81.388741
iter 90 value 81.263323
iter 100 value 81.052633
final value 81.052633
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 107.401676
iter 10 value 92.730555
iter 20 value 85.654518
iter 30 value 85.223665
iter 40 value 84.427649
iter 50 value 83.153552
iter 60 value 81.922563
iter 70 value 81.596986
iter 80 value 81.085164
iter 90 value 80.704904
iter 100 value 80.547600
final value 80.547600
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 116.277229
final value 94.486125
converged
Fitting Repeat 2
# weights: 103
initial value 94.883501
final value 94.485612
converged
Fitting Repeat 3
# weights: 103
initial value 96.350421
final value 94.485993
converged
Fitting Repeat 4
# weights: 103
initial value 95.695275
final value 94.485814
converged
Fitting Repeat 5
# weights: 103
initial value 98.224678
final value 94.486020
converged
Fitting Repeat 1
# weights: 305
initial value 107.632708
iter 10 value 94.489327
iter 20 value 94.484242
iter 30 value 93.585011
iter 40 value 93.457336
iter 50 value 93.456983
final value 93.456823
converged
Fitting Repeat 2
# weights: 305
initial value 107.068658
iter 10 value 94.489480
iter 20 value 94.090308
iter 30 value 89.773250
iter 40 value 86.728234
iter 50 value 84.983037
iter 60 value 84.843911
iter 70 value 84.805300
iter 80 value 84.649737
iter 90 value 84.647689
iter 100 value 84.644753
final value 84.644753
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 110.913705
iter 10 value 94.489278
iter 20 value 94.460635
iter 30 value 93.547309
iter 40 value 90.695984
iter 50 value 90.599061
iter 60 value 90.440025
iter 70 value 90.192366
iter 70 value 90.192365
iter 70 value 90.192365
final value 90.192365
converged
Fitting Repeat 4
# weights: 305
initial value 112.400749
iter 10 value 94.489249
iter 20 value 94.430389
iter 30 value 86.635620
iter 40 value 85.155465
iter 50 value 84.407585
iter 60 value 84.407146
final value 84.407139
converged
Fitting Repeat 5
# weights: 305
initial value 100.213787
iter 10 value 94.280348
iter 20 value 94.276121
final value 94.275773
converged
Fitting Repeat 1
# weights: 507
initial value 124.440407
iter 10 value 93.100341
iter 20 value 93.051344
iter 30 value 93.045349
final value 93.043503
converged
Fitting Repeat 2
# weights: 507
initial value 104.091092
iter 10 value 94.492140
iter 20 value 94.484283
final value 94.484265
converged
Fitting Repeat 3
# weights: 507
initial value 99.966299
iter 10 value 94.237444
iter 20 value 94.234891
iter 30 value 93.087739
iter 40 value 84.380730
iter 50 value 82.115604
iter 60 value 82.089778
iter 70 value 81.576163
iter 80 value 81.228617
iter 90 value 81.095153
iter 100 value 81.082856
final value 81.082856
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 102.558708
iter 10 value 94.491381
iter 20 value 93.562943
final value 93.502516
converged
Fitting Repeat 5
# weights: 507
initial value 108.950629
iter 10 value 93.896101
iter 20 value 93.857680
iter 30 value 93.849750
iter 40 value 93.620822
iter 50 value 93.574720
iter 60 value 93.562265
iter 70 value 93.484592
iter 80 value 88.635114
iter 90 value 86.014005
iter 100 value 85.415779
final value 85.415779
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 100.430356
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 97.239899
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 96.130341
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 95.497025
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 103.886609
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 110.420651
final value 94.052910
converged
Fitting Repeat 2
# weights: 305
initial value 99.104598
final value 94.052910
converged
Fitting Repeat 3
# weights: 305
initial value 98.615860
final value 94.052910
converged
Fitting Repeat 4
# weights: 305
initial value 99.168136
iter 10 value 92.082583
iter 20 value 86.279018
iter 30 value 86.001492
iter 40 value 85.986137
final value 85.986025
converged
Fitting Repeat 5
# weights: 305
initial value 96.434709
final value 94.052910
converged
Fitting Repeat 1
# weights: 507
initial value 94.834323
final value 94.052910
converged
Fitting Repeat 2
# weights: 507
initial value 110.928847
iter 10 value 91.384539
iter 20 value 90.843076
final value 90.842390
converged
Fitting Repeat 3
# weights: 507
initial value 105.346480
final value 94.052910
converged
Fitting Repeat 4
# weights: 507
initial value 96.021374
iter 10 value 90.790478
iter 20 value 84.332062
iter 30 value 83.325253
iter 40 value 82.914841
iter 50 value 82.688818
iter 60 value 82.688306
final value 82.688277
converged
Fitting Repeat 5
# weights: 507
initial value 115.331767
final value 94.052910
converged
Fitting Repeat 1
# weights: 103
initial value 112.089952
iter 10 value 94.011115
iter 20 value 91.536105
iter 30 value 91.302489
iter 40 value 91.038918
iter 50 value 90.477213
iter 60 value 90.037542
iter 70 value 89.874753
iter 80 value 89.786708
final value 89.783271
converged
Fitting Repeat 2
# weights: 103
initial value 100.309740
iter 10 value 94.033225
iter 20 value 92.454140
iter 30 value 91.355185
iter 40 value 89.879567
iter 50 value 89.577959
final value 89.574677
converged
Fitting Repeat 3
# weights: 103
initial value 98.539138
iter 10 value 94.040785
iter 20 value 93.851925
iter 30 value 89.792463
iter 40 value 84.619137
iter 50 value 84.397466
iter 60 value 83.804376
iter 70 value 83.481389
iter 80 value 82.602637
iter 90 value 82.556781
final value 82.554091
converged
Fitting Repeat 4
# weights: 103
initial value 100.558305
iter 10 value 94.054797
iter 20 value 93.893401
iter 30 value 93.454915
iter 40 value 93.385055
iter 50 value 85.626399
iter 60 value 85.160308
iter 70 value 84.297572
iter 80 value 83.009708
iter 90 value 82.776269
iter 100 value 81.953029
final value 81.953029
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 99.757838
iter 10 value 94.078432
iter 20 value 94.056545
iter 30 value 94.054885
iter 40 value 91.053769
iter 50 value 84.118763
iter 60 value 83.918607
iter 70 value 83.661334
iter 80 value 83.268564
iter 90 value 82.643460
iter 100 value 82.267280
final value 82.267280
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 102.721243
iter 10 value 95.289663
iter 20 value 92.667453
iter 30 value 87.752453
iter 40 value 83.715090
iter 50 value 83.416491
iter 60 value 82.102326
iter 70 value 81.997656
iter 80 value 81.556824
iter 90 value 81.223811
iter 100 value 80.936423
final value 80.936423
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 105.070441
iter 10 value 93.951558
iter 20 value 93.445557
iter 30 value 92.781095
iter 40 value 90.308982
iter 50 value 87.860991
iter 60 value 83.897043
iter 70 value 81.275434
iter 80 value 81.065096
iter 90 value 80.818538
iter 100 value 79.897647
final value 79.897647
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 100.769025
iter 10 value 94.043703
iter 20 value 90.736386
iter 30 value 90.450359
iter 40 value 87.713484
iter 50 value 84.605764
iter 60 value 82.872634
iter 70 value 80.423234
iter 80 value 79.899022
iter 90 value 79.564200
iter 100 value 79.378220
final value 79.378220
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 100.002358
iter 10 value 94.110474
iter 20 value 91.431620
iter 30 value 89.223993
iter 40 value 87.973819
iter 50 value 83.489709
iter 60 value 81.665436
iter 70 value 81.011550
iter 80 value 80.554796
iter 90 value 80.032422
iter 100 value 79.626807
final value 79.626807
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 107.111339
iter 10 value 94.050686
iter 20 value 84.417516
iter 30 value 83.932736
iter 40 value 82.605556
iter 50 value 82.218859
iter 60 value 82.049403
iter 70 value 81.805758
iter 80 value 80.490565
iter 90 value 79.865999
iter 100 value 79.727429
final value 79.727429
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 108.620045
iter 10 value 94.990489
iter 20 value 93.957876
iter 30 value 91.970713
iter 40 value 83.881798
iter 50 value 83.445622
iter 60 value 82.173306
iter 70 value 81.222311
iter 80 value 80.575978
iter 90 value 79.824220
iter 100 value 79.492968
final value 79.492968
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 119.047345
iter 10 value 94.102269
iter 20 value 90.504431
iter 30 value 83.583159
iter 40 value 82.996080
iter 50 value 82.385455
iter 60 value 81.328548
iter 70 value 80.533599
iter 80 value 80.358406
iter 90 value 80.058839
iter 100 value 79.611186
final value 79.611186
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 114.910273
iter 10 value 93.421935
iter 20 value 85.402921
iter 30 value 84.381856
iter 40 value 83.327768
iter 50 value 82.999286
iter 60 value 82.822436
iter 70 value 82.166565
iter 80 value 81.517789
iter 90 value 81.268976
iter 100 value 81.048445
final value 81.048445
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 103.294488
iter 10 value 94.030328
iter 20 value 92.481701
iter 30 value 90.736036
iter 40 value 85.218121
iter 50 value 82.745989
iter 60 value 81.132264
iter 70 value 80.123496
iter 80 value 79.904187
iter 90 value 79.300492
iter 100 value 79.241853
final value 79.241853
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 110.106334
iter 10 value 95.315544
iter 20 value 88.826560
iter 30 value 87.781461
iter 40 value 83.312968
iter 50 value 82.402553
iter 60 value 81.074376
iter 70 value 80.673343
iter 80 value 79.818750
iter 90 value 79.226271
iter 100 value 79.007866
final value 79.007866
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 96.297821
iter 10 value 94.054474
iter 20 value 94.043430
iter 30 value 83.548764
iter 40 value 83.361601
iter 50 value 83.361109
final value 83.361086
converged
Fitting Repeat 2
# weights: 103
initial value 99.303046
iter 10 value 93.630472
iter 20 value 93.629211
iter 30 value 91.986521
iter 40 value 88.845355
iter 50 value 88.836997
iter 60 value 86.154274
iter 70 value 84.887235
iter 80 value 84.882198
iter 90 value 84.881837
final value 84.881792
converged
Fitting Repeat 3
# weights: 103
initial value 96.923173
final value 93.917369
converged
Fitting Repeat 4
# weights: 103
initial value 107.101316
final value 94.054651
converged
Fitting Repeat 5
# weights: 103
initial value 98.830000
final value 94.054353
converged
Fitting Repeat 1
# weights: 305
initial value 112.972019
iter 10 value 94.058143
iter 20 value 93.914773
iter 30 value 93.074197
iter 40 value 93.068418
iter 50 value 93.018219
iter 60 value 93.016901
final value 93.016896
converged
Fitting Repeat 2
# weights: 305
initial value 97.885472
iter 10 value 93.920371
iter 20 value 93.550642
iter 30 value 90.199347
iter 40 value 89.846566
iter 50 value 89.565716
iter 60 value 88.076685
final value 87.731440
converged
Fitting Repeat 3
# weights: 305
initial value 96.791783
iter 10 value 94.046854
iter 20 value 93.989335
final value 93.915948
converged
Fitting Repeat 4
# weights: 305
initial value 103.527926
iter 10 value 94.046727
iter 20 value 93.723414
iter 30 value 85.224453
iter 40 value 84.175485
final value 84.164466
converged
Fitting Repeat 5
# weights: 305
initial value 96.688440
iter 10 value 84.411423
iter 20 value 83.546424
iter 30 value 83.545810
iter 40 value 83.542859
iter 50 value 83.405576
iter 60 value 83.404965
final value 83.404939
converged
Fitting Repeat 1
# weights: 507
initial value 113.156157
iter 10 value 94.062216
iter 20 value 94.046660
iter 30 value 92.469262
iter 40 value 91.157763
iter 50 value 90.568449
iter 60 value 84.219412
iter 70 value 80.982996
iter 80 value 80.428873
iter 90 value 80.385778
iter 100 value 80.382761
final value 80.382761
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 100.279312
iter 10 value 93.365141
iter 20 value 93.329054
iter 30 value 92.966400
iter 40 value 92.959022
iter 50 value 92.125920
iter 60 value 90.609750
iter 70 value 90.608235
iter 80 value 90.565325
iter 90 value 90.535110
iter 100 value 89.705248
final value 89.705248
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 115.708384
iter 10 value 94.059322
iter 20 value 85.319071
iter 30 value 82.965755
iter 40 value 82.416963
iter 50 value 82.355443
iter 60 value 82.355288
iter 70 value 82.354543
final value 82.354464
converged
Fitting Repeat 4
# weights: 507
initial value 116.718958
iter 10 value 93.924380
iter 20 value 93.916323
iter 30 value 93.915986
final value 93.915983
converged
Fitting Repeat 5
# weights: 507
initial value 113.719717
iter 10 value 93.953157
iter 20 value 89.519619
iter 30 value 84.727527
iter 40 value 83.322703
iter 50 value 82.409662
iter 60 value 82.406558
iter 70 value 81.893313
iter 80 value 81.845746
iter 90 value 81.707515
iter 100 value 80.948405
final value 80.948405
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 97.199912
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 97.141136
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 100.220588
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 96.645185
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 102.084410
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 96.330287
iter 10 value 93.551684
final value 93.394928
converged
Fitting Repeat 2
# weights: 305
initial value 97.340374
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 98.894756
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 103.246748
iter 10 value 93.394929
final value 93.394928
converged
Fitting Repeat 5
# weights: 305
initial value 100.284770
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 97.291169
iter 10 value 93.321243
final value 93.320226
converged
Fitting Repeat 2
# weights: 507
initial value 109.413301
final value 94.484211
converged
Fitting Repeat 3
# weights: 507
initial value 101.330568
iter 10 value 93.394930
iter 10 value 93.394929
iter 10 value 93.394929
final value 93.394929
converged
Fitting Repeat 4
# weights: 507
initial value 111.531782
iter 10 value 93.362959
final value 93.362784
converged
Fitting Repeat 5
# weights: 507
initial value 123.801230
final value 94.449438
converged
Fitting Repeat 1
# weights: 103
initial value 97.825982
iter 10 value 93.718867
iter 20 value 93.444474
iter 30 value 91.840581
iter 40 value 90.908438
iter 50 value 90.438923
iter 60 value 86.852770
iter 70 value 86.033330
iter 80 value 83.251536
iter 90 value 81.702981
iter 100 value 81.416354
final value 81.416354
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 110.275821
iter 10 value 94.486646
iter 20 value 93.848051
iter 30 value 93.678296
iter 40 value 93.677013
iter 50 value 93.526514
iter 60 value 92.852184
iter 70 value 90.065273
iter 80 value 87.660287
iter 90 value 86.937823
iter 100 value 83.990963
final value 83.990963
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 100.241885
iter 10 value 94.490329
iter 20 value 87.008844
iter 30 value 85.432250
iter 40 value 85.394929
iter 50 value 85.191318
iter 60 value 83.628112
iter 70 value 83.117186
iter 80 value 83.110916
iter 80 value 83.110915
iter 80 value 83.110915
final value 83.110915
converged
Fitting Repeat 4
# weights: 103
initial value 109.253504
iter 10 value 94.488543
iter 20 value 94.040073
iter 30 value 93.855785
iter 40 value 93.476825
iter 50 value 92.232651
iter 60 value 85.643303
iter 70 value 85.347658
iter 80 value 85.196702
iter 90 value 84.764903
iter 100 value 83.754139
final value 83.754139
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 101.548008
iter 10 value 94.444805
iter 20 value 91.869029
iter 30 value 90.074598
iter 40 value 88.644396
iter 50 value 85.480550
iter 60 value 84.997713
iter 70 value 83.693939
iter 80 value 81.506986
iter 90 value 81.331358
iter 100 value 81.327794
final value 81.327794
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 104.606673
iter 10 value 93.863062
iter 20 value 93.492996
iter 30 value 91.958220
iter 40 value 88.645447
iter 50 value 85.862022
iter 60 value 82.331087
iter 70 value 81.648007
iter 80 value 81.080285
iter 90 value 80.696422
iter 100 value 80.459560
final value 80.459560
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 114.686094
iter 10 value 90.366223
iter 20 value 84.598509
iter 30 value 82.123163
iter 40 value 80.451186
iter 50 value 79.875935
iter 60 value 79.820238
iter 70 value 79.795054
iter 80 value 79.695825
iter 90 value 79.601791
iter 100 value 79.436288
final value 79.436288
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 101.198650
iter 10 value 92.113932
iter 20 value 85.470266
iter 30 value 83.598031
iter 40 value 81.947269
iter 50 value 81.405543
iter 60 value 80.118282
iter 70 value 79.493348
iter 80 value 79.329082
iter 90 value 79.253717
iter 100 value 79.230589
final value 79.230589
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 110.034979
iter 10 value 94.473462
iter 20 value 89.727409
iter 30 value 86.117504
iter 40 value 84.426892
iter 50 value 84.038329
iter 60 value 83.909234
iter 70 value 83.865259
iter 80 value 83.456602
iter 90 value 81.954907
iter 100 value 80.536666
final value 80.536666
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 112.338228
iter 10 value 93.647680
iter 20 value 86.842728
iter 30 value 85.817541
iter 40 value 85.385570
iter 50 value 83.440473
iter 60 value 82.432707
iter 70 value 81.440102
iter 80 value 80.410552
iter 90 value 79.783310
iter 100 value 79.499190
final value 79.499190
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 131.315256
iter 10 value 93.627106
iter 20 value 86.974669
iter 30 value 85.523936
iter 40 value 85.013399
iter 50 value 84.768372
iter 60 value 84.138145
iter 70 value 83.914543
iter 80 value 83.808675
iter 90 value 83.399483
iter 100 value 83.062662
final value 83.062662
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 113.237368
iter 10 value 94.013741
iter 20 value 91.970117
iter 30 value 88.153971
iter 40 value 84.360985
iter 50 value 83.636169
iter 60 value 83.173476
iter 70 value 82.944331
iter 80 value 82.747890
iter 90 value 82.027887
iter 100 value 81.270124
final value 81.270124
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 107.416344
iter 10 value 93.836465
iter 20 value 87.022519
iter 30 value 86.281512
iter 40 value 82.762679
iter 50 value 80.852375
iter 60 value 80.447797
iter 70 value 80.059480
iter 80 value 79.846894
iter 90 value 79.586962
iter 100 value 79.385112
final value 79.385112
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 105.212376
iter 10 value 93.934546
iter 20 value 87.300390
iter 30 value 84.574584
iter 40 value 83.922244
iter 50 value 83.418529
iter 60 value 82.864302
iter 70 value 82.705921
iter 80 value 82.346783
iter 90 value 81.983730
iter 100 value 81.587474
final value 81.587474
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 112.483181
iter 10 value 88.810340
iter 20 value 86.231739
iter 30 value 84.643990
iter 40 value 83.509643
iter 50 value 82.787780
iter 60 value 82.243337
iter 70 value 80.735767
iter 80 value 80.283288
iter 90 value 80.010928
iter 100 value 79.812010
final value 79.812010
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 98.542097
final value 94.485769
converged
Fitting Repeat 2
# weights: 103
initial value 99.751470
final value 94.486058
converged
Fitting Repeat 3
# weights: 103
initial value 98.521272
final value 94.485937
converged
Fitting Repeat 4
# weights: 103
initial value 97.579743
final value 94.485577
converged
Fitting Repeat 5
# weights: 103
initial value 113.603189
iter 10 value 93.397525
iter 20 value 93.397241
iter 30 value 93.205718
iter 40 value 93.154971
iter 50 value 93.154617
final value 93.154609
converged
Fitting Repeat 1
# weights: 305
initial value 101.867600
iter 10 value 93.399870
iter 20 value 93.396278
final value 93.395542
converged
Fitting Repeat 2
# weights: 305
initial value 96.502457
iter 10 value 94.488680
iter 20 value 93.399273
final value 93.321078
converged
Fitting Repeat 3
# weights: 305
initial value 95.886560
iter 10 value 94.490264
iter 20 value 94.453953
iter 30 value 92.207293
iter 40 value 87.298189
iter 50 value 87.040904
iter 60 value 85.979993
iter 70 value 85.976580
iter 80 value 85.975729
final value 85.975510
converged
Fitting Repeat 4
# weights: 305
initial value 95.673638
iter 10 value 94.485643
iter 20 value 94.042588
iter 30 value 92.168153
iter 40 value 84.343805
iter 50 value 84.339750
iter 60 value 84.338609
iter 70 value 84.335016
iter 80 value 84.226933
iter 90 value 84.226613
iter 90 value 84.226612
final value 84.226612
converged
Fitting Repeat 5
# weights: 305
initial value 113.596388
iter 10 value 94.489051
iter 20 value 94.453144
iter 30 value 93.530934
iter 40 value 93.403970
iter 50 value 93.395630
iter 60 value 91.995587
iter 70 value 86.055681
final value 86.055614
converged
Fitting Repeat 1
# weights: 507
initial value 101.084991
iter 10 value 94.453558
iter 20 value 94.450808
iter 30 value 94.055139
iter 40 value 93.643864
iter 50 value 93.515269
iter 60 value 93.201482
iter 70 value 84.689663
iter 80 value 83.154000
iter 90 value 83.028170
iter 100 value 83.027868
final value 83.027868
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 97.794749
iter 10 value 93.404839
iter 20 value 93.399297
iter 30 value 93.396567
iter 40 value 93.285680
final value 93.154720
converged
Fitting Repeat 3
# weights: 507
initial value 120.391907
iter 10 value 94.492073
iter 20 value 94.484442
iter 30 value 93.321077
final value 93.321067
converged
Fitting Repeat 4
# weights: 507
initial value 104.443937
iter 10 value 93.385367
iter 20 value 92.584051
iter 30 value 83.638739
iter 40 value 82.178721
iter 50 value 82.151096
iter 60 value 81.827862
iter 70 value 81.455674
iter 80 value 81.454028
iter 90 value 81.452686
iter 100 value 81.452019
final value 81.452019
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 95.564432
iter 10 value 94.491878
iter 20 value 93.091825
iter 30 value 93.071055
iter 40 value 93.056434
iter 50 value 88.910707
iter 60 value 87.128795
iter 70 value 87.128468
iter 80 value 87.126745
iter 90 value 87.044375
iter 100 value 83.850537
final value 83.850537
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 97.384779
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 97.468568
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 115.037674
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 104.823233
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 102.998126
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 107.292431
final value 94.052910
converged
Fitting Repeat 2
# weights: 305
initial value 96.326468
final value 94.052910
converged
Fitting Repeat 3
# weights: 305
initial value 95.576302
final value 94.052910
converged
Fitting Repeat 4
# weights: 305
initial value 97.225519
final value 94.052910
converged
Fitting Repeat 5
# weights: 305
initial value 118.646313
final value 94.052910
converged
Fitting Repeat 1
# weights: 507
initial value 96.212731
final value 94.038251
converged
Fitting Repeat 2
# weights: 507
initial value 111.069450
final value 94.052910
converged
Fitting Repeat 3
# weights: 507
initial value 112.175460
iter 10 value 93.946272
final value 93.946242
converged
Fitting Repeat 4
# weights: 507
initial value 104.734641
final value 94.038251
converged
Fitting Repeat 5
# weights: 507
initial value 100.269628
final value 94.038251
converged
Fitting Repeat 1
# weights: 103
initial value 101.534774
iter 10 value 93.960784
iter 20 value 88.600335
iter 30 value 84.861925
iter 40 value 84.466135
iter 50 value 84.166779
iter 60 value 84.132655
iter 70 value 84.120777
final value 84.120272
converged
Fitting Repeat 2
# weights: 103
initial value 100.415080
iter 10 value 94.056704
iter 20 value 87.527054
iter 30 value 85.283477
iter 40 value 84.519315
iter 50 value 83.968426
iter 60 value 83.870724
iter 70 value 83.753994
iter 80 value 83.726490
final value 83.726373
converged
Fitting Repeat 3
# weights: 103
initial value 102.314505
iter 10 value 94.002072
iter 20 value 87.517524
iter 30 value 86.369814
iter 40 value 84.627817
iter 50 value 84.326359
iter 60 value 84.146869
iter 70 value 84.120795
final value 84.120272
converged
Fitting Repeat 4
# weights: 103
initial value 97.161489
iter 10 value 94.034764
iter 20 value 87.338181
iter 30 value 84.347443
iter 40 value 82.991452
iter 50 value 81.556817
iter 60 value 80.677887
iter 70 value 80.436006
iter 80 value 80.196555
iter 90 value 80.180992
iter 90 value 80.180991
iter 90 value 80.180991
final value 80.180991
converged
Fitting Repeat 5
# weights: 103
initial value 105.474907
iter 10 value 94.207473
iter 20 value 94.058207
iter 30 value 93.040096
iter 40 value 87.638201
iter 50 value 83.517666
iter 60 value 82.669711
iter 70 value 81.822140
iter 80 value 81.324832
iter 90 value 80.521472
iter 100 value 80.215889
final value 80.215889
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 120.124250
iter 10 value 93.939283
iter 20 value 88.108661
iter 30 value 86.911839
iter 40 value 85.072022
iter 50 value 82.581061
iter 60 value 82.131635
iter 70 value 80.276333
iter 80 value 79.259737
iter 90 value 78.934746
iter 100 value 78.876839
final value 78.876839
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 99.433369
iter 10 value 94.062727
iter 20 value 90.826280
iter 30 value 86.612368
iter 40 value 84.664629
iter 50 value 84.545659
iter 60 value 84.444178
iter 70 value 84.237032
iter 80 value 82.423512
iter 90 value 80.408690
iter 100 value 80.073391
final value 80.073391
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 99.028938
iter 10 value 94.065471
iter 20 value 90.233466
iter 30 value 84.808177
iter 40 value 83.766245
iter 50 value 80.690453
iter 60 value 79.833326
iter 70 value 79.642776
iter 80 value 79.471081
iter 90 value 79.436072
iter 100 value 79.414384
final value 79.414384
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 124.288608
iter 10 value 93.685767
iter 20 value 84.989864
iter 30 value 83.169765
iter 40 value 82.926930
iter 50 value 82.379726
iter 60 value 81.885186
iter 70 value 81.585166
iter 80 value 81.524786
iter 90 value 81.361166
iter 100 value 81.007463
final value 81.007463
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 100.110266
iter 10 value 94.097081
iter 20 value 94.037851
iter 30 value 93.935069
iter 40 value 85.556075
iter 50 value 82.335400
iter 60 value 80.575940
iter 70 value 79.973387
iter 80 value 79.466266
iter 90 value 79.334825
iter 100 value 79.213193
final value 79.213193
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 116.364600
iter 10 value 95.428726
iter 20 value 84.347217
iter 30 value 81.857860
iter 40 value 81.339580
iter 50 value 80.412670
iter 60 value 79.798348
iter 70 value 79.463399
iter 80 value 79.265230
iter 90 value 78.965109
iter 100 value 78.822653
final value 78.822653
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 104.144887
iter 10 value 91.397319
iter 20 value 90.972911
iter 30 value 85.104713
iter 40 value 82.724196
iter 50 value 81.610230
iter 60 value 80.299065
iter 70 value 79.452615
iter 80 value 79.331506
iter 90 value 79.286565
iter 100 value 79.248079
final value 79.248079
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 106.343478
iter 10 value 93.936016
iter 20 value 84.209975
iter 30 value 81.178410
iter 40 value 80.036368
iter 50 value 79.812936
iter 60 value 79.673793
iter 70 value 79.510463
iter 80 value 79.225427
iter 90 value 79.186762
iter 100 value 79.057076
final value 79.057076
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 113.916826
iter 10 value 94.058971
iter 20 value 89.300098
iter 30 value 83.874425
iter 40 value 82.650881
iter 50 value 81.563070
iter 60 value 80.830835
iter 70 value 80.279403
iter 80 value 79.570178
iter 90 value 79.064231
iter 100 value 78.771081
final value 78.771081
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 112.576553
iter 10 value 95.120604
iter 20 value 93.104754
iter 30 value 87.913574
iter 40 value 82.671375
iter 50 value 81.431078
iter 60 value 80.587475
iter 70 value 79.732590
iter 80 value 79.404453
iter 90 value 79.008293
iter 100 value 78.851741
final value 78.851741
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 107.162653
final value 94.054823
converged
Fitting Repeat 2
# weights: 103
initial value 96.423397
final value 94.056445
converged
Fitting Repeat 3
# weights: 103
initial value 98.667115
final value 94.054977
converged
Fitting Repeat 4
# weights: 103
initial value 98.102103
final value 94.054838
converged
Fitting Repeat 5
# weights: 103
initial value 102.813645
final value 93.877916
converged
Fitting Repeat 1
# weights: 305
initial value 104.525671
iter 10 value 94.043216
iter 20 value 93.827046
iter 30 value 84.601033
iter 40 value 84.545167
iter 50 value 82.964217
iter 60 value 81.238039
iter 70 value 81.192018
iter 80 value 81.191797
iter 90 value 81.190410
iter 100 value 81.183709
final value 81.183709
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 98.283270
iter 10 value 94.057805
iter 20 value 93.967118
iter 30 value 86.422869
iter 40 value 86.355288
iter 50 value 86.354526
iter 60 value 83.956306
iter 70 value 83.953815
iter 80 value 83.953751
iter 90 value 83.953522
final value 83.953516
converged
Fitting Repeat 3
# weights: 305
initial value 106.670598
iter 10 value 93.974135
iter 20 value 93.671825
iter 30 value 92.524778
final value 92.502055
converged
Fitting Repeat 4
# weights: 305
initial value 96.970686
iter 10 value 94.057199
iter 20 value 93.898519
iter 30 value 85.321512
iter 40 value 84.638362
iter 50 value 80.177754
iter 60 value 78.588307
iter 70 value 78.265136
iter 80 value 78.256564
iter 90 value 78.255565
iter 100 value 77.555991
final value 77.555991
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 100.593843
iter 10 value 94.043319
iter 20 value 93.496660
iter 30 value 93.297227
iter 40 value 92.369848
iter 50 value 92.126475
iter 60 value 92.126119
iter 60 value 92.126119
iter 60 value 92.126119
final value 92.126119
converged
Fitting Repeat 1
# weights: 507
initial value 99.201333
iter 10 value 93.877738
iter 20 value 93.871412
iter 30 value 84.574057
iter 40 value 84.398140
iter 50 value 84.395995
iter 60 value 83.097295
iter 70 value 82.641996
final value 82.479562
converged
Fitting Repeat 2
# weights: 507
initial value 106.329269
iter 10 value 94.064895
iter 20 value 94.057365
iter 30 value 93.988712
iter 40 value 86.967878
iter 50 value 85.318635
iter 60 value 83.793984
iter 70 value 83.788225
iter 80 value 83.774894
iter 90 value 83.758902
iter 100 value 83.580492
final value 83.580492
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 107.968840
iter 10 value 92.401029
iter 20 value 91.266747
iter 30 value 90.790634
iter 40 value 90.789852
iter 50 value 88.970163
iter 60 value 81.728736
iter 70 value 80.415999
iter 80 value 79.848411
iter 90 value 79.451327
iter 100 value 79.172312
final value 79.172312
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 128.118534
iter 10 value 93.892981
iter 20 value 93.832022
iter 30 value 93.723105
iter 40 value 82.524775
iter 50 value 82.148051
iter 60 value 82.128174
final value 82.121880
converged
Fitting Repeat 5
# weights: 507
initial value 97.178633
iter 10 value 94.060024
iter 20 value 93.946087
iter 30 value 83.520129
iter 40 value 83.445202
iter 50 value 83.444841
iter 50 value 83.444840
final value 83.444840
converged
Fitting Repeat 1
# weights: 103
initial value 118.797152
final value 94.467391
converged
Fitting Repeat 2
# weights: 103
initial value 96.826325
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 102.773457
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 99.190745
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 104.387297
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 106.585466
final value 94.467391
converged
Fitting Repeat 2
# weights: 305
initial value 97.589722
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 96.635889
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 103.465277
final value 94.467391
converged
Fitting Repeat 5
# weights: 305
initial value 97.095210
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 124.510123
iter 10 value 89.696795
iter 20 value 87.289619
iter 30 value 85.463416
iter 40 value 84.771900
final value 84.767548
converged
Fitting Repeat 2
# weights: 507
initial value 135.232514
iter 10 value 94.484213
final value 94.484211
converged
Fitting Repeat 3
# weights: 507
initial value 98.420822
final value 94.484210
converged
Fitting Repeat 4
# weights: 507
initial value 100.054176
iter 10 value 94.374384
iter 20 value 87.595699
iter 30 value 87.584840
final value 87.584678
converged
Fitting Repeat 5
# weights: 507
initial value 106.428785
final value 94.482478
converged
Fitting Repeat 1
# weights: 103
initial value 98.941658
iter 10 value 94.488550
iter 20 value 94.424845
iter 30 value 93.744068
iter 40 value 86.618033
iter 50 value 85.917642
iter 60 value 85.462866
iter 70 value 85.274448
iter 80 value 84.900262
iter 90 value 83.519357
iter 100 value 82.601887
final value 82.601887
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 113.467006
iter 10 value 94.340733
iter 20 value 87.939038
iter 30 value 87.279384
iter 40 value 87.119805
iter 50 value 86.665400
iter 60 value 86.425920
iter 70 value 86.375068
final value 86.371522
converged
Fitting Repeat 3
# weights: 103
initial value 97.044729
iter 10 value 94.481946
iter 20 value 87.303936
iter 30 value 86.239036
iter 40 value 85.882511
iter 50 value 83.177911
iter 60 value 82.795373
final value 82.776302
converged
Fitting Repeat 4
# weights: 103
initial value 100.505537
iter 10 value 94.492866
iter 20 value 94.488258
iter 30 value 87.294906
iter 40 value 86.881379
final value 86.808030
converged
Fitting Repeat 5
# weights: 103
initial value 96.808485
iter 10 value 94.494527
iter 20 value 94.486390
iter 30 value 94.146180
iter 40 value 93.184899
iter 50 value 88.197671
iter 60 value 86.102794
iter 70 value 83.868031
iter 80 value 83.785317
iter 90 value 83.733964
iter 100 value 83.508249
final value 83.508249
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 118.009221
iter 10 value 94.564252
iter 20 value 90.011043
iter 30 value 88.204962
iter 40 value 87.365660
iter 50 value 84.807903
iter 60 value 82.279491
iter 70 value 81.602116
iter 80 value 81.217363
iter 90 value 80.878751
iter 100 value 80.844328
final value 80.844328
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 125.921208
iter 10 value 94.350057
iter 20 value 87.940792
iter 30 value 86.439027
iter 40 value 85.518378
iter 50 value 84.101208
iter 60 value 83.547918
iter 70 value 83.127820
iter 80 value 82.623327
iter 90 value 82.436835
iter 100 value 82.295022
final value 82.295022
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 103.229504
iter 10 value 94.443412
iter 20 value 92.002161
iter 30 value 84.931940
iter 40 value 84.233749
iter 50 value 83.995851
iter 60 value 83.619174
iter 70 value 83.391709
iter 80 value 83.206944
iter 90 value 82.966111
iter 100 value 82.936168
final value 82.936168
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 109.589844
iter 10 value 94.901705
iter 20 value 94.547277
iter 30 value 88.248456
iter 40 value 86.519301
iter 50 value 84.619800
iter 60 value 83.504972
iter 70 value 82.989106
iter 80 value 82.953871
iter 90 value 82.866902
iter 100 value 81.779052
final value 81.779052
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 103.410742
iter 10 value 94.070027
iter 20 value 88.318266
iter 30 value 87.574714
iter 40 value 84.352287
iter 50 value 83.694866
iter 60 value 82.933169
iter 70 value 82.453641
iter 80 value 81.396100
iter 90 value 80.964356
iter 100 value 80.886227
final value 80.886227
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 127.421371
iter 10 value 94.451296
iter 20 value 89.065052
iter 30 value 86.585519
iter 40 value 86.173044
iter 50 value 85.924083
iter 60 value 85.894842
iter 70 value 85.723316
iter 80 value 83.609587
iter 90 value 82.774322
iter 100 value 82.079799
final value 82.079799
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 114.350756
iter 10 value 94.648965
iter 20 value 92.961573
iter 30 value 89.714875
iter 40 value 88.411724
iter 50 value 87.282587
iter 60 value 86.737361
iter 70 value 86.395506
iter 80 value 86.278378
iter 90 value 85.995406
iter 100 value 84.506439
final value 84.506439
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 113.009354
iter 10 value 93.735443
iter 20 value 87.638144
iter 30 value 83.668193
iter 40 value 82.788882
iter 50 value 82.165178
iter 60 value 81.425267
iter 70 value 81.111218
iter 80 value 81.017917
iter 90 value 80.882360
iter 100 value 80.790180
final value 80.790180
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 118.077914
iter 10 value 94.468099
iter 20 value 87.268479
iter 30 value 86.853611
iter 40 value 85.799073
iter 50 value 83.119160
iter 60 value 81.494174
iter 70 value 80.935200
iter 80 value 80.843484
iter 90 value 80.808597
iter 100 value 80.801708
final value 80.801708
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 108.645222
iter 10 value 94.602324
iter 20 value 87.068433
iter 30 value 86.224274
iter 40 value 85.565101
iter 50 value 83.785111
iter 60 value 82.151002
iter 70 value 81.537896
iter 80 value 80.853889
iter 90 value 80.605414
iter 100 value 80.525109
final value 80.525109
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 97.125499
final value 94.485825
converged
Fitting Repeat 2
# weights: 103
initial value 106.983209
final value 94.468806
converged
Fitting Repeat 3
# weights: 103
initial value 94.521903
final value 94.485711
converged
Fitting Repeat 4
# weights: 103
initial value 99.553611
final value 94.485619
converged
Fitting Repeat 5
# weights: 103
initial value 94.511902
final value 94.485807
converged
Fitting Repeat 1
# weights: 305
initial value 98.261072
iter 10 value 94.488882
iter 20 value 94.442472
iter 30 value 90.294188
iter 40 value 90.278797
iter 50 value 89.964887
iter 60 value 89.257294
iter 70 value 88.641542
iter 80 value 82.367890
iter 90 value 82.021304
iter 100 value 81.951556
final value 81.951556
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 101.758104
iter 10 value 94.472234
iter 20 value 86.915042
iter 30 value 85.942555
iter 40 value 85.344482
iter 50 value 85.049066
iter 60 value 85.015446
iter 70 value 85.010436
iter 80 value 85.007995
iter 90 value 85.006759
iter 100 value 85.006142
final value 85.006142
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 98.138044
iter 10 value 94.444303
iter 20 value 94.428337
iter 30 value 94.258872
iter 40 value 94.241703
iter 50 value 94.241090
final value 94.239773
converged
Fitting Repeat 4
# weights: 305
initial value 101.803431
iter 10 value 92.195879
iter 20 value 90.783092
iter 30 value 85.992959
iter 40 value 85.989406
iter 50 value 85.959480
iter 60 value 85.772172
iter 70 value 85.741890
iter 80 value 85.263714
iter 90 value 85.263593
iter 100 value 85.263519
final value 85.263519
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 106.966895
iter 10 value 94.489387
iter 20 value 94.483044
iter 30 value 87.874935
iter 40 value 87.344013
iter 50 value 86.936611
iter 60 value 86.929620
iter 60 value 86.929619
final value 86.929619
converged
Fitting Repeat 1
# weights: 507
initial value 101.846068
iter 10 value 94.475014
iter 20 value 93.295497
iter 30 value 82.879156
iter 40 value 81.858558
iter 50 value 80.491794
iter 60 value 80.437911
iter 70 value 80.275164
iter 80 value 80.269184
iter 90 value 80.269025
iter 100 value 80.268554
final value 80.268554
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 134.140507
iter 10 value 86.337968
iter 20 value 86.208293
iter 30 value 86.149769
iter 40 value 86.047161
iter 50 value 86.045362
iter 60 value 86.043080
iter 70 value 85.304947
iter 80 value 84.956795
iter 90 value 84.956137
iter 100 value 84.953667
final value 84.953667
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 108.933277
iter 10 value 94.493952
iter 20 value 94.483553
iter 30 value 87.358577
iter 40 value 86.179898
iter 50 value 82.233368
iter 60 value 82.079495
iter 70 value 82.079278
iter 80 value 82.078738
iter 90 value 82.078588
iter 100 value 82.069898
final value 82.069898
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 95.902501
iter 10 value 94.491956
iter 20 value 94.343268
iter 30 value 85.258727
final value 85.240573
converged
Fitting Repeat 5
# weights: 507
initial value 117.200271
iter 10 value 94.431386
iter 20 value 93.061667
iter 30 value 83.726607
iter 40 value 83.183252
iter 50 value 83.178907
iter 60 value 82.746527
iter 70 value 82.744464
iter 80 value 82.743247
iter 80 value 82.743247
final value 82.743247
converged
Fitting Repeat 1
# weights: 305
initial value 148.633279
iter 10 value 117.912275
iter 20 value 112.639143
iter 30 value 108.692641
iter 40 value 106.591878
iter 50 value 105.556985
iter 60 value 103.152171
iter 70 value 102.291029
iter 80 value 101.423825
iter 90 value 101.373625
iter 100 value 101.353104
final value 101.353104
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 129.233220
iter 10 value 117.801896
iter 20 value 114.074372
iter 30 value 112.795182
iter 40 value 110.877434
iter 50 value 105.910446
iter 60 value 103.589846
iter 70 value 102.147877
iter 80 value 101.714555
iter 90 value 101.316971
iter 100 value 101.129365
final value 101.129365
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 126.842884
iter 10 value 118.043611
iter 20 value 117.871653
iter 30 value 109.015382
iter 40 value 106.561263
iter 50 value 105.051021
iter 60 value 102.050738
iter 70 value 101.223911
iter 80 value 101.062548
iter 90 value 100.928909
iter 100 value 100.805565
final value 100.805565
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 144.500413
iter 10 value 115.067794
iter 20 value 107.705880
iter 30 value 106.627341
iter 40 value 106.174731
iter 50 value 105.335844
iter 60 value 103.466350
iter 70 value 102.297329
iter 80 value 102.017184
iter 90 value 101.593697
iter 100 value 101.300742
final value 101.300742
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 124.183630
iter 10 value 111.309674
iter 20 value 106.121460
iter 30 value 104.985210
iter 40 value 103.654594
iter 50 value 101.706912
iter 60 value 101.225992
iter 70 value 101.028376
iter 80 value 100.943817
iter 90 value 100.899585
iter 100 value 100.693963
final value 100.693963
stopped after 100 iterations
svmRadial
ranger
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
RUNIT TEST PROTOCOL -- Sat May 16 00:54:40 2026
***********************************************
Number of test functions: 7
Number of errors: 0
Number of failures: 0
1 Test Suite :
HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures
Number of test functions: 7
Number of errors: 0
Number of failures: 0
Warning messages:
1: `repeats` has no meaning for this resampling method.
2: executing %dopar% sequentially: no parallel backend registered
>
>
>
>
> proc.time()
user system elapsed
40.546 1.235 83.601
HPiP.Rcheck/HPiP-Ex.timings
| name | user | system | elapsed | |
| FSmethod | 34.899 | 0.448 | 35.432 | |
| FreqInteractors | 0.444 | 0.028 | 0.472 | |
| calculateAAC | 0.034 | 0.000 | 0.033 | |
| calculateAutocor | 0.287 | 0.013 | 0.299 | |
| calculateCTDC | 0.073 | 0.000 | 0.074 | |
| calculateCTDD | 0.494 | 0.001 | 0.495 | |
| calculateCTDT | 0.137 | 0.001 | 0.138 | |
| calculateCTriad | 0.378 | 0.003 | 0.381 | |
| calculateDC | 0.084 | 0.000 | 0.084 | |
| calculateF | 0.316 | 0.001 | 0.317 | |
| calculateKSAAP | 0.093 | 0.001 | 0.094 | |
| calculateQD_Sm | 1.878 | 0.009 | 1.887 | |
| calculateTC | 1.494 | 0.023 | 1.518 | |
| calculateTC_Sm | 0.277 | 0.000 | 0.277 | |
| corr_plot | 35.298 | 0.400 | 35.701 | |
| enrichfindP | 0.569 | 0.041 | 12.572 | |
| enrichfind_hp | 0.051 | 0.002 | 1.117 | |
| enrichplot | 0.480 | 0.003 | 0.483 | |
| filter_missing_values | 0.001 | 0.000 | 0.001 | |
| getFASTA | 0.403 | 0.022 | 3.939 | |
| getHPI | 0.001 | 0.000 | 0.001 | |
| get_negativePPI | 0.002 | 0.001 | 0.003 | |
| get_positivePPI | 0 | 0 | 0 | |
| impute_missing_data | 0.002 | 0.000 | 0.003 | |
| plotPPI | 0.100 | 0.001 | 0.101 | |
| pred_ensembel | 12.780 | 0.220 | 11.713 | |
| var_imp | 34.368 | 0.564 | 34.933 | |