| Back to Build/check report for BioC 3.24: simplified long |
|
This page was generated on 2026-05-15 11:33 -0400 (Fri, 15 May 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4894 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1015/2375 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HPiP 1.19.0 (landing page) Matineh Rahmatbakhsh
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
| See other builds for HPiP in R Universe. | ||||||||||||||
|
To the developers/maintainers of the HPiP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: HPiP |
| Version: 1.19.0 |
| Command: /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.24-bioc/R/site-library --timings HPiP_1.19.0.tar.gz |
| StartedAt: 2026-05-15 00:50:09 -0400 (Fri, 15 May 2026) |
| EndedAt: 2026-05-15 01:05:17 -0400 (Fri, 15 May 2026) |
| EllapsedTime: 908.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HPiP.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.24-bioc/R/site-library --timings HPiP_1.19.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.24-bioc/meat/HPiP.Rcheck’
* using R version 4.6.0 RC (2026-04-17 r89917)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0
* running under: Ubuntu 24.04.4 LTS
* using session charset: UTF-8
* current time: 2026-05-15 04:50:10 UTC
* checking for file ‘HPiP/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HPiP’ version ‘1.19.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HPiP’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License stub is invalid DCF.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) getHPI.Rd:29: Lost braces
29 | then the Kronecker product is the code{(pm × qn)} block matrix
| ^
* checking Rd metadata ... OK
* checking Rd cross-references ... INFO
Package unavailable to check Rd xrefs: ‘ftrCOOL’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
FSmethod 34.830 0.509 36.468
var_imp 34.150 0.482 34.661
corr_plot 33.966 0.441 34.491
pred_ensembel 13.103 0.156 12.002
enrichfindP 0.531 0.031 17.364
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/home/biocbuild/bbs-3.24-bioc/meat/HPiP.Rcheck/00check.log’
for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.24-bioc/R/site-library’ * installing *source* package ‘HPiP’ ... ** this is package ‘HPiP’ version ‘1.19.0’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R version 4.6.0 RC (2026-04-17 r89917) -- "Because it was There"
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage('HPiP')
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
avNNet
Loading required package: ggplot2
Loading required package: lattice
Fitting Repeat 1
# weights: 103
initial value 108.045045
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 100.481407
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 96.256822
iter 10 value 88.176692
iter 20 value 86.987188
final value 86.986792
converged
Fitting Repeat 4
# weights: 103
initial value 105.217113
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 99.454787
final value 93.915746
converged
Fitting Repeat 1
# weights: 305
initial value 100.892062
final value 93.915746
converged
Fitting Repeat 2
# weights: 305
initial value 109.194645
final value 94.052910
converged
Fitting Repeat 3
# weights: 305
initial value 102.175443
final value 94.052910
converged
Fitting Repeat 4
# weights: 305
initial value 91.760693
iter 10 value 87.894637
iter 20 value 87.877354
final value 87.877316
converged
Fitting Repeat 5
# weights: 305
initial value 104.761696
final value 94.052910
converged
Fitting Repeat 1
# weights: 507
initial value 94.752563
iter 10 value 93.628236
iter 20 value 93.025432
final value 93.025205
converged
Fitting Repeat 2
# weights: 507
initial value 97.174387
final value 93.697143
converged
Fitting Repeat 3
# weights: 507
initial value 94.882375
final value 94.052910
converged
Fitting Repeat 4
# weights: 507
initial value 98.093698
iter 10 value 89.298567
iter 20 value 86.837878
iter 30 value 86.773584
final value 86.771499
converged
Fitting Repeat 5
# weights: 507
initial value 102.302213
iter 10 value 92.773080
iter 20 value 92.312061
iter 30 value 92.286815
final value 92.286652
converged
Fitting Repeat 1
# weights: 103
initial value 97.551181
iter 10 value 94.055356
iter 20 value 93.800943
iter 30 value 91.068725
iter 40 value 85.877017
iter 50 value 85.390768
iter 60 value 85.192367
iter 70 value 84.801270
iter 80 value 84.282994
iter 90 value 83.297042
iter 100 value 83.023848
final value 83.023848
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 100.536784
iter 10 value 93.291503
iter 20 value 91.791090
iter 30 value 91.244840
iter 40 value 91.064651
final value 91.064162
converged
Fitting Repeat 3
# weights: 103
initial value 106.025956
iter 10 value 93.702000
iter 20 value 87.226506
iter 30 value 85.644364
iter 40 value 84.639160
iter 50 value 82.096457
iter 60 value 81.834312
iter 70 value 81.833078
final value 81.833075
converged
Fitting Repeat 4
# weights: 103
initial value 99.513699
iter 10 value 94.026390
iter 20 value 92.112697
iter 30 value 84.352780
iter 40 value 82.379428
iter 50 value 81.636180
iter 60 value 80.258209
iter 70 value 80.146455
iter 80 value 80.069408
final value 80.069404
converged
Fitting Repeat 5
# weights: 103
initial value 102.143554
iter 10 value 93.793826
iter 20 value 93.641373
iter 30 value 92.669713
iter 40 value 89.294336
iter 50 value 86.249008
iter 60 value 85.482402
iter 70 value 83.521184
iter 80 value 83.158966
iter 90 value 82.999933
final value 82.999856
converged
Fitting Repeat 1
# weights: 305
initial value 104.961575
iter 10 value 93.837717
iter 20 value 92.114762
iter 30 value 90.272711
iter 40 value 89.520095
iter 50 value 89.364561
iter 60 value 86.980556
iter 70 value 81.874686
iter 80 value 81.494950
iter 90 value 80.706328
iter 100 value 80.326053
final value 80.326053
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 111.318475
iter 10 value 93.970878
iter 20 value 87.708324
iter 30 value 84.266643
iter 40 value 83.230655
iter 50 value 81.917709
iter 60 value 80.028627
iter 70 value 79.535846
iter 80 value 79.493095
iter 90 value 79.160556
iter 100 value 78.772817
final value 78.772817
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 120.110851
iter 10 value 94.059865
iter 20 value 86.990227
iter 30 value 83.708945
iter 40 value 82.548360
iter 50 value 82.190491
iter 60 value 80.535258
iter 70 value 80.309105
iter 80 value 80.041610
iter 90 value 79.992898
iter 100 value 79.548991
final value 79.548991
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 102.754436
iter 10 value 94.440907
iter 20 value 91.877566
iter 30 value 90.453943
iter 40 value 89.391047
iter 50 value 83.061612
iter 60 value 81.318887
iter 70 value 80.731463
iter 80 value 79.977961
iter 90 value 79.829060
iter 100 value 79.695118
final value 79.695118
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 115.375305
iter 10 value 92.044531
iter 20 value 89.532362
iter 30 value 89.453728
iter 40 value 89.151528
iter 50 value 88.281347
iter 60 value 81.415178
iter 70 value 80.256353
iter 80 value 79.692088
iter 90 value 78.839119
iter 100 value 78.681424
final value 78.681424
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 110.349271
iter 10 value 94.071302
iter 20 value 84.639735
iter 30 value 83.030776
iter 40 value 81.380010
iter 50 value 81.151550
iter 60 value 80.894363
iter 70 value 79.581515
iter 80 value 79.306565
iter 90 value 78.470232
iter 100 value 78.188229
final value 78.188229
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 107.025626
iter 10 value 93.988101
iter 20 value 83.549634
iter 30 value 83.120862
iter 40 value 80.910616
iter 50 value 79.677306
iter 60 value 79.014298
iter 70 value 78.706448
iter 80 value 78.327283
iter 90 value 78.230359
iter 100 value 78.210143
final value 78.210143
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 123.262792
iter 10 value 94.103169
iter 20 value 93.778985
iter 30 value 89.179019
iter 40 value 83.975932
iter 50 value 82.014767
iter 60 value 81.891465
iter 70 value 81.555822
iter 80 value 79.826149
iter 90 value 79.354074
iter 100 value 78.914085
final value 78.914085
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 136.196639
iter 10 value 93.735191
iter 20 value 88.280901
iter 30 value 86.977852
iter 40 value 83.789093
iter 50 value 81.236813
iter 60 value 80.349264
iter 70 value 80.062488
iter 80 value 79.660172
iter 90 value 79.409877
iter 100 value 78.772380
final value 78.772380
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 104.993830
iter 10 value 95.190783
iter 20 value 85.550987
iter 30 value 84.807273
iter 40 value 82.347524
iter 50 value 81.813748
iter 60 value 80.001297
iter 70 value 79.357533
iter 80 value 79.220550
iter 90 value 79.104262
iter 100 value 78.984992
final value 78.984992
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 94.210949
final value 94.054712
converged
Fitting Repeat 2
# weights: 103
initial value 101.635672
final value 94.054638
converged
Fitting Repeat 3
# weights: 103
initial value 99.148331
final value 94.054616
converged
Fitting Repeat 4
# weights: 103
initial value 94.252198
final value 94.054659
converged
Fitting Repeat 5
# weights: 103
initial value 102.814258
final value 94.054515
converged
Fitting Repeat 1
# weights: 305
initial value 101.545862
iter 10 value 94.057591
iter 20 value 93.266792
iter 30 value 83.692675
iter 40 value 83.682810
iter 50 value 83.644911
iter 60 value 83.642401
final value 83.641918
converged
Fitting Repeat 2
# weights: 305
initial value 97.345223
iter 10 value 93.518013
iter 20 value 93.497029
iter 30 value 92.042370
iter 40 value 91.739348
iter 50 value 91.737360
iter 60 value 91.735154
final value 91.735153
converged
Fitting Repeat 3
# weights: 305
initial value 98.246290
iter 10 value 83.677975
iter 20 value 83.676125
iter 30 value 83.596273
iter 40 value 83.596148
iter 50 value 83.593899
final value 83.593795
converged
Fitting Repeat 4
# weights: 305
initial value 100.760660
iter 10 value 94.057574
iter 20 value 92.617052
iter 30 value 85.837347
iter 40 value 84.066049
iter 50 value 84.015676
iter 60 value 83.997972
iter 70 value 83.992904
iter 80 value 83.991636
iter 90 value 83.834642
iter 100 value 83.393251
final value 83.393251
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 95.513913
iter 10 value 94.056738
iter 20 value 93.982414
iter 30 value 93.635601
iter 40 value 93.634123
final value 93.633822
converged
Fitting Repeat 1
# weights: 507
initial value 98.376264
iter 10 value 93.923466
iter 20 value 93.620444
iter 30 value 89.697738
iter 40 value 88.556631
final value 88.542438
converged
Fitting Repeat 2
# weights: 507
initial value 107.548896
iter 10 value 94.061405
iter 20 value 93.955923
iter 30 value 90.086994
iter 40 value 84.661133
iter 50 value 82.717763
iter 60 value 82.677786
iter 70 value 82.641954
iter 80 value 82.511177
iter 90 value 82.483646
final value 82.483489
converged
Fitting Repeat 3
# weights: 507
initial value 112.242056
iter 10 value 93.923954
iter 20 value 93.737897
iter 30 value 93.672842
iter 40 value 93.624892
iter 50 value 93.622553
iter 60 value 93.622432
iter 70 value 93.622050
final value 93.622030
converged
Fitting Repeat 4
# weights: 507
initial value 96.264150
iter 10 value 93.693800
iter 20 value 93.689023
iter 30 value 88.413589
iter 40 value 80.737039
iter 50 value 80.403449
iter 60 value 80.363539
final value 80.363247
converged
Fitting Repeat 5
# weights: 507
initial value 97.172533
iter 10 value 94.060648
iter 20 value 94.052948
iter 30 value 84.187074
iter 40 value 83.676900
iter 50 value 83.644548
iter 60 value 83.637248
final value 83.634215
converged
Fitting Repeat 1
# weights: 103
initial value 100.042161
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 103.692040
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 101.904588
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 107.952429
final value 94.483810
converged
Fitting Repeat 5
# weights: 103
initial value 96.741058
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 100.444157
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 98.935441
iter 10 value 94.494577
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 105.871211
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 95.759930
final value 94.379747
converged
Fitting Repeat 5
# weights: 305
initial value 112.714138
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 109.169438
final value 94.484211
converged
Fitting Repeat 2
# weights: 507
initial value 110.473481
iter 10 value 85.863926
iter 20 value 85.648789
iter 30 value 85.647282
final value 85.647280
converged
Fitting Repeat 3
# weights: 507
initial value 101.963868
final value 94.473118
converged
Fitting Repeat 4
# weights: 507
initial value 130.435226
final value 94.484211
converged
Fitting Repeat 5
# weights: 507
initial value 110.210693
final value 94.473118
converged
Fitting Repeat 1
# weights: 103
initial value 97.069849
iter 10 value 94.495292
iter 20 value 93.783475
iter 30 value 87.193151
iter 40 value 85.246297
iter 50 value 84.834087
iter 60 value 83.570488
iter 70 value 83.131916
iter 80 value 83.116780
iter 90 value 83.108989
final value 83.108910
converged
Fitting Repeat 2
# weights: 103
initial value 101.548350
iter 10 value 95.560011
iter 20 value 94.487570
iter 30 value 87.097950
iter 40 value 84.222415
iter 50 value 82.975131
iter 60 value 82.784077
iter 70 value 82.710324
iter 80 value 82.656682
final value 82.656666
converged
Fitting Repeat 3
# weights: 103
initial value 102.336797
iter 10 value 94.503254
iter 20 value 94.483537
iter 30 value 93.369112
iter 40 value 93.266551
iter 50 value 90.339154
iter 60 value 86.047676
iter 70 value 85.770028
iter 80 value 84.715626
iter 90 value 84.427711
iter 100 value 84.369327
final value 84.369327
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 101.738139
iter 10 value 94.488002
iter 20 value 89.380525
iter 30 value 85.649796
iter 40 value 84.618455
iter 50 value 82.767584
iter 60 value 81.644060
iter 70 value 81.418373
final value 81.417555
converged
Fitting Repeat 5
# weights: 103
initial value 116.216530
iter 10 value 94.416807
iter 20 value 87.357285
iter 30 value 85.366346
iter 40 value 84.858519
iter 50 value 84.370614
iter 60 value 84.235249
iter 70 value 83.978467
iter 80 value 83.932481
final value 83.909762
converged
Fitting Repeat 1
# weights: 305
initial value 108.193254
iter 10 value 92.307049
iter 20 value 83.691227
iter 30 value 83.495588
iter 40 value 83.023085
iter 50 value 82.818742
iter 60 value 82.062682
iter 70 value 81.898402
iter 80 value 81.748449
iter 90 value 81.586201
iter 100 value 80.906265
final value 80.906265
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 110.078612
iter 10 value 94.607574
iter 20 value 93.864870
iter 30 value 89.501355
iter 40 value 89.032142
iter 50 value 88.608255
iter 60 value 88.344829
iter 70 value 86.594584
iter 80 value 85.609915
iter 90 value 82.715596
iter 100 value 81.580243
final value 81.580243
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 100.125034
iter 10 value 94.538373
iter 20 value 94.462507
iter 30 value 88.789945
iter 40 value 84.934024
iter 50 value 83.600176
iter 60 value 83.096409
iter 70 value 82.874503
iter 80 value 82.717936
iter 90 value 81.478091
iter 100 value 80.427409
final value 80.427409
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 101.021996
iter 10 value 94.476520
iter 20 value 91.312234
iter 30 value 87.507700
iter 40 value 86.950212
iter 50 value 84.838241
iter 60 value 84.091577
iter 70 value 83.803603
iter 80 value 83.572430
iter 90 value 83.195816
iter 100 value 82.958938
final value 82.958938
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 119.451613
iter 10 value 94.482558
iter 20 value 92.554306
iter 30 value 86.695626
iter 40 value 86.091221
iter 50 value 85.896004
iter 60 value 85.340875
iter 70 value 83.865038
iter 80 value 82.453058
iter 90 value 80.960370
iter 100 value 80.322074
final value 80.322074
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 104.190716
iter 10 value 94.732499
iter 20 value 93.503248
iter 30 value 91.815249
iter 40 value 91.655020
iter 50 value 91.373576
final value 91.346792
converged
Fitting Repeat 2
# weights: 507
initial value 122.352301
iter 10 value 87.504701
iter 20 value 84.571230
iter 30 value 83.311164
iter 40 value 83.194952
iter 50 value 82.228015
iter 60 value 81.692211
iter 70 value 80.850531
iter 80 value 80.550070
iter 90 value 80.459215
iter 100 value 80.385600
final value 80.385600
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 129.912297
iter 10 value 95.064461
iter 20 value 94.056181
iter 30 value 88.342198
iter 40 value 85.504947
iter 50 value 85.164634
iter 60 value 82.289966
iter 70 value 81.839430
iter 80 value 81.339373
iter 90 value 80.823492
iter 100 value 80.522195
final value 80.522195
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 109.627412
iter 10 value 94.498253
iter 20 value 93.269968
iter 30 value 87.856909
iter 40 value 85.179486
iter 50 value 83.814079
iter 60 value 81.705943
iter 70 value 81.410512
iter 80 value 81.118070
iter 90 value 80.857871
iter 100 value 80.529988
final value 80.529988
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 106.414259
iter 10 value 94.332902
iter 20 value 87.096507
iter 30 value 83.418615
iter 40 value 82.751774
iter 50 value 82.269924
iter 60 value 82.147180
iter 70 value 82.128231
iter 80 value 81.969063
iter 90 value 81.691682
iter 100 value 80.146724
final value 80.146724
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 95.671660
final value 94.485873
converged
Fitting Repeat 2
# weights: 103
initial value 101.197893
iter 10 value 94.485750
iter 20 value 94.461850
iter 30 value 94.141670
iter 40 value 94.134468
iter 40 value 94.134467
final value 94.134368
converged
Fitting Repeat 3
# weights: 103
initial value 95.373202
final value 94.474774
converged
Fitting Repeat 4
# weights: 103
initial value 96.374259
final value 94.485946
converged
Fitting Repeat 5
# weights: 103
initial value 94.727100
iter 10 value 94.485769
iter 20 value 94.484214
iter 30 value 90.212282
iter 40 value 86.690414
iter 50 value 86.502089
iter 60 value 86.501535
iter 70 value 84.524398
iter 80 value 83.071828
iter 90 value 83.033328
iter 100 value 82.496175
final value 82.496175
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 95.230685
iter 10 value 94.488831
iter 20 value 94.484228
final value 94.484218
converged
Fitting Repeat 2
# weights: 305
initial value 122.209326
iter 10 value 94.478179
iter 20 value 94.476784
iter 30 value 94.473352
final value 94.473141
converged
Fitting Repeat 3
# weights: 305
initial value 97.387398
iter 10 value 94.489154
iter 20 value 94.483426
final value 94.473279
converged
Fitting Repeat 4
# weights: 305
initial value 96.035272
iter 10 value 94.119368
iter 20 value 94.118352
iter 30 value 94.117177
iter 40 value 94.113901
iter 50 value 94.112717
iter 60 value 94.110882
iter 70 value 94.093361
final value 94.092683
converged
Fitting Repeat 5
# weights: 305
initial value 99.098668
iter 10 value 94.488588
iter 20 value 94.478328
iter 30 value 91.001623
iter 40 value 82.907631
final value 82.627742
converged
Fitting Repeat 1
# weights: 507
initial value 103.255753
iter 10 value 86.378099
iter 20 value 85.578700
iter 30 value 85.575813
iter 40 value 85.572998
iter 50 value 85.506778
iter 60 value 84.877075
iter 70 value 81.578526
iter 80 value 81.102915
iter 90 value 80.261628
iter 100 value 79.699757
final value 79.699757
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 96.713086
iter 10 value 93.805321
iter 20 value 92.148604
iter 30 value 88.000571
iter 40 value 87.948566
iter 50 value 87.944322
iter 60 value 86.656672
iter 70 value 85.028977
iter 80 value 84.471476
iter 90 value 84.360381
iter 100 value 84.356466
final value 84.356466
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 95.900378
iter 10 value 94.488406
iter 20 value 88.209054
iter 30 value 87.318251
iter 40 value 87.126469
iter 50 value 86.594869
iter 60 value 85.626198
iter 70 value 85.559805
iter 80 value 84.250503
iter 90 value 84.206901
iter 100 value 84.186184
final value 84.186184
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 100.251341
iter 10 value 94.490974
iter 20 value 94.487458
iter 30 value 94.479701
iter 40 value 94.475488
iter 50 value 93.736903
iter 60 value 93.703427
iter 70 value 93.685823
final value 93.684912
converged
Fitting Repeat 5
# weights: 507
initial value 111.908476
iter 10 value 92.227706
iter 20 value 92.225682
final value 92.225423
converged
Fitting Repeat 1
# weights: 103
initial value 99.711665
iter 10 value 88.859197
iter 20 value 86.105476
iter 30 value 85.518478
final value 85.518070
converged
Fitting Repeat 2
# weights: 103
initial value 114.239943
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 103.462002
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 113.516192
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 102.220141
iter 10 value 94.200478
final value 94.067633
converged
Fitting Repeat 1
# weights: 305
initial value 96.261859
final value 94.266667
converged
Fitting Repeat 2
# weights: 305
initial value 98.415811
final value 94.275354
converged
Fitting Repeat 3
# weights: 305
initial value 100.975908
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 105.876396
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 114.521661
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 103.360076
iter 10 value 94.275363
iter 10 value 94.275363
iter 10 value 94.275363
final value 94.275363
converged
Fitting Repeat 2
# weights: 507
initial value 99.253135
iter 10 value 90.923461
iter 20 value 83.749252
iter 30 value 82.170194
final value 82.167808
converged
Fitting Repeat 3
# weights: 507
initial value 98.735015
final value 94.275362
converged
Fitting Repeat 4
# weights: 507
initial value 111.144605
iter 10 value 93.688566
iter 20 value 88.825627
iter 30 value 88.655352
final value 88.655283
converged
Fitting Repeat 5
# weights: 507
initial value 98.465715
iter 10 value 94.268814
iter 20 value 94.230468
iter 30 value 94.229818
iter 30 value 94.229818
iter 30 value 94.229818
final value 94.229818
converged
Fitting Repeat 1
# weights: 103
initial value 97.708776
iter 10 value 93.990158
iter 20 value 90.772251
iter 30 value 89.689943
iter 40 value 88.042875
iter 50 value 87.594706
iter 60 value 86.036567
iter 70 value 85.742723
iter 80 value 85.442509
iter 90 value 85.280149
final value 85.278773
converged
Fitting Repeat 2
# weights: 103
initial value 111.465745
iter 10 value 94.432660
iter 20 value 89.293523
iter 30 value 88.478867
iter 40 value 87.561197
iter 50 value 86.035582
iter 60 value 85.657314
iter 70 value 85.440270
iter 80 value 85.400164
final value 85.397711
converged
Fitting Repeat 3
# weights: 103
initial value 103.018999
iter 10 value 94.478745
iter 20 value 93.907172
iter 30 value 90.937000
iter 40 value 87.002138
iter 50 value 86.645945
iter 60 value 86.556415
iter 70 value 86.516590
iter 80 value 86.360947
iter 90 value 84.865982
final value 84.865461
converged
Fitting Repeat 4
# weights: 103
initial value 102.848003
iter 10 value 94.493643
iter 20 value 87.546246
iter 30 value 86.529252
iter 40 value 86.040773
iter 50 value 85.017187
iter 60 value 84.419370
iter 70 value 83.910728
iter 80 value 83.696035
iter 90 value 83.675249
iter 90 value 83.675249
iter 90 value 83.675249
final value 83.675249
converged
Fitting Repeat 5
# weights: 103
initial value 105.349181
iter 10 value 94.483128
iter 20 value 90.511374
iter 30 value 88.184849
iter 40 value 87.933345
iter 50 value 85.597570
iter 60 value 84.932383
iter 70 value 84.865927
iter 80 value 84.865498
final value 84.865494
converged
Fitting Repeat 1
# weights: 305
initial value 103.294493
iter 10 value 94.487679
iter 20 value 94.230406
iter 30 value 89.509446
iter 40 value 87.755751
iter 50 value 84.033887
iter 60 value 83.833133
iter 70 value 81.876805
iter 80 value 81.195102
iter 90 value 80.981901
iter 100 value 80.908112
final value 80.908112
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 103.985006
iter 10 value 93.279260
iter 20 value 93.000577
iter 30 value 92.283031
iter 40 value 86.384229
iter 50 value 84.222234
iter 60 value 83.213851
iter 70 value 82.746790
iter 80 value 81.895174
iter 90 value 81.325577
iter 100 value 80.835139
final value 80.835139
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 107.246202
iter 10 value 94.494003
iter 20 value 94.330974
iter 30 value 91.923549
iter 40 value 88.738393
iter 50 value 84.903683
iter 60 value 83.072991
iter 70 value 82.701661
iter 80 value 81.996766
iter 90 value 81.909068
iter 100 value 81.533602
final value 81.533602
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 114.712200
iter 10 value 95.123357
iter 20 value 94.495495
iter 30 value 94.330345
iter 40 value 87.786112
iter 50 value 87.542508
iter 60 value 87.013186
iter 70 value 85.144871
iter 80 value 83.155848
iter 90 value 82.372024
iter 100 value 82.017450
final value 82.017450
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 102.844099
iter 10 value 94.503318
iter 20 value 94.351269
iter 30 value 92.589654
iter 40 value 89.923888
iter 50 value 85.344716
iter 60 value 83.526710
iter 70 value 82.138942
iter 80 value 81.682879
iter 90 value 81.575921
iter 100 value 81.528047
final value 81.528047
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 106.758300
iter 10 value 94.595588
iter 20 value 93.457356
iter 30 value 84.510576
iter 40 value 83.283538
iter 50 value 83.086820
iter 60 value 82.383288
iter 70 value 81.645204
iter 80 value 81.233448
iter 90 value 80.767201
iter 100 value 80.453842
final value 80.453842
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 109.287280
iter 10 value 95.347849
iter 20 value 91.272857
iter 30 value 86.450968
iter 40 value 85.434990
iter 50 value 85.077260
iter 60 value 84.576131
iter 70 value 84.495895
iter 80 value 84.134565
iter 90 value 82.329851
iter 100 value 81.933367
final value 81.933367
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 105.376992
iter 10 value 94.039498
iter 20 value 85.783715
iter 30 value 84.459853
iter 40 value 81.706299
iter 50 value 80.625024
iter 60 value 80.462235
iter 70 value 80.274486
iter 80 value 80.000645
iter 90 value 79.869550
iter 100 value 79.855280
final value 79.855280
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 120.778677
iter 10 value 94.340337
iter 20 value 88.376776
iter 30 value 87.093434
iter 40 value 85.605421
iter 50 value 84.349309
iter 60 value 81.714947
iter 70 value 81.341526
iter 80 value 80.494610
iter 90 value 80.303744
iter 100 value 80.214470
final value 80.214470
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 103.421674
iter 10 value 94.439370
iter 20 value 93.066599
iter 30 value 92.325145
iter 40 value 87.426010
iter 50 value 84.556147
iter 60 value 83.379287
iter 70 value 83.086567
iter 80 value 82.483012
iter 90 value 81.823503
iter 100 value 81.663834
final value 81.663834
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 97.298472
final value 94.485495
converged
Fitting Repeat 2
# weights: 103
initial value 98.371990
final value 94.485929
converged
Fitting Repeat 3
# weights: 103
initial value 100.286087
final value 94.485863
converged
Fitting Repeat 4
# weights: 103
initial value 101.564072
final value 94.485900
converged
Fitting Repeat 5
# weights: 103
initial value 97.191136
iter 10 value 94.485925
iter 20 value 92.991213
iter 30 value 87.194203
iter 40 value 85.807352
iter 50 value 84.732938
final value 84.732396
converged
Fitting Repeat 1
# weights: 305
initial value 102.212604
iter 10 value 94.489145
iter 20 value 94.484214
iter 30 value 90.592572
iter 40 value 87.617133
final value 87.613060
converged
Fitting Repeat 2
# weights: 305
initial value 97.449202
iter 10 value 94.280089
iter 20 value 94.275624
iter 30 value 88.294104
iter 40 value 86.879325
final value 86.879092
converged
Fitting Repeat 3
# weights: 305
initial value 99.686426
iter 10 value 94.489088
iter 20 value 94.484368
final value 94.484216
converged
Fitting Repeat 4
# weights: 305
initial value 98.067312
iter 10 value 94.488344
iter 20 value 94.479487
final value 94.396705
converged
Fitting Repeat 5
# weights: 305
initial value 95.234734
iter 10 value 94.488282
iter 20 value 87.763534
iter 30 value 85.026262
iter 40 value 84.632765
iter 50 value 84.628089
iter 60 value 84.622143
iter 60 value 84.622143
final value 84.622143
converged
Fitting Repeat 1
# weights: 507
initial value 100.096987
iter 10 value 92.309048
iter 20 value 92.146241
iter 30 value 92.140495
iter 40 value 92.125266
iter 50 value 92.120132
iter 60 value 92.120057
final value 92.119863
converged
Fitting Repeat 2
# weights: 507
initial value 100.651733
iter 10 value 94.021247
iter 20 value 93.825665
iter 30 value 93.820329
iter 40 value 91.824876
iter 50 value 85.341618
iter 60 value 84.780192
iter 70 value 84.011987
iter 80 value 83.935315
iter 90 value 83.915738
iter 100 value 83.912362
final value 83.912362
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 104.330028
iter 10 value 94.436172
iter 20 value 94.357998
iter 30 value 89.095069
iter 40 value 88.027976
iter 50 value 87.703670
iter 60 value 86.552710
iter 70 value 86.480575
iter 80 value 86.479078
iter 90 value 86.478885
final value 86.478764
converged
Fitting Repeat 4
# weights: 507
initial value 101.336207
iter 10 value 94.490477
iter 20 value 94.484388
iter 30 value 94.155964
iter 40 value 84.815730
iter 50 value 84.477883
iter 60 value 84.473891
iter 70 value 84.083958
iter 80 value 83.990003
final value 83.989998
converged
Fitting Repeat 5
# weights: 507
initial value 96.548502
iter 10 value 94.491835
iter 20 value 94.412279
iter 30 value 89.384407
iter 40 value 88.513911
iter 50 value 88.511910
final value 88.511528
converged
Fitting Repeat 1
# weights: 103
initial value 108.472835
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 96.589743
final value 94.476190
converged
Fitting Repeat 3
# weights: 103
initial value 98.766277
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 94.922989
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 95.232351
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 96.980452
final value 94.275362
converged
Fitting Repeat 2
# weights: 305
initial value 107.575913
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 106.359502
iter 10 value 94.264858
iter 10 value 94.264858
iter 10 value 94.264858
final value 94.264858
converged
Fitting Repeat 4
# weights: 305
initial value 114.913709
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 94.816517
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 98.401944
final value 94.484211
converged
Fitting Repeat 2
# weights: 507
initial value 96.425320
final value 94.275362
converged
Fitting Repeat 3
# weights: 507
initial value 103.102792
final value 94.275362
converged
Fitting Repeat 4
# weights: 507
initial value 115.269503
final value 94.275362
converged
Fitting Repeat 5
# weights: 507
initial value 101.123773
final value 94.484211
converged
Fitting Repeat 1
# weights: 103
initial value 101.010490
iter 10 value 94.488542
iter 20 value 88.874771
iter 30 value 84.718325
iter 40 value 84.043558
iter 50 value 83.794480
iter 60 value 83.171401
iter 70 value 82.907611
iter 80 value 82.871209
final value 82.870845
converged
Fitting Repeat 2
# weights: 103
initial value 99.941097
iter 10 value 94.549777
iter 20 value 92.946427
iter 30 value 91.799541
iter 40 value 85.281912
iter 50 value 84.341915
iter 60 value 84.197633
iter 70 value 83.749788
iter 80 value 82.946465
iter 90 value 82.876838
iter 100 value 82.870845
final value 82.870845
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 107.128505
iter 10 value 94.354396
iter 20 value 93.137053
iter 30 value 90.507793
iter 40 value 86.822128
iter 50 value 85.965118
iter 60 value 85.778904
final value 85.778200
converged
Fitting Repeat 4
# weights: 103
initial value 106.928761
iter 10 value 94.485136
iter 20 value 94.254986
iter 30 value 94.216854
iter 40 value 89.966995
iter 50 value 87.509651
iter 60 value 86.454030
iter 70 value 85.802040
iter 80 value 85.778879
iter 90 value 85.776078
iter 90 value 85.776077
iter 90 value 85.776077
final value 85.776077
converged
Fitting Repeat 5
# weights: 103
initial value 97.970648
iter 10 value 94.488606
iter 20 value 89.613799
iter 30 value 88.282242
iter 40 value 86.384123
iter 50 value 85.552188
iter 60 value 83.766120
iter 70 value 82.955385
iter 80 value 82.631328
iter 90 value 82.591550
final value 82.591153
converged
Fitting Repeat 1
# weights: 305
initial value 108.188501
iter 10 value 94.642550
iter 20 value 92.066620
iter 30 value 87.428217
iter 40 value 85.679286
iter 50 value 84.536985
iter 60 value 84.268487
iter 70 value 84.097086
iter 80 value 83.379940
iter 90 value 82.401806
iter 100 value 82.173918
final value 82.173918
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 100.707759
iter 10 value 94.431817
iter 20 value 86.691510
iter 30 value 85.763294
iter 40 value 84.467874
iter 50 value 83.086996
iter 60 value 82.138633
iter 70 value 81.568908
iter 80 value 81.493340
iter 90 value 81.459985
iter 100 value 81.455157
final value 81.455157
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 108.725050
iter 10 value 94.497477
iter 20 value 90.117434
iter 30 value 89.375260
iter 40 value 88.337938
iter 50 value 88.117832
final value 88.113997
converged
Fitting Repeat 4
# weights: 305
initial value 111.810023
iter 10 value 94.526999
iter 20 value 89.939716
iter 30 value 87.394551
iter 40 value 86.612381
iter 50 value 86.088377
iter 60 value 84.520066
iter 70 value 82.900912
iter 80 value 82.469954
iter 90 value 82.252480
iter 100 value 82.068709
final value 82.068709
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 101.867420
iter 10 value 94.582225
iter 20 value 91.535157
iter 30 value 87.414654
iter 40 value 86.326113
iter 50 value 84.735286
iter 60 value 83.431780
iter 70 value 82.868401
iter 80 value 82.746104
iter 90 value 82.702558
iter 100 value 82.588965
final value 82.588965
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 113.505840
iter 10 value 94.458099
iter 20 value 91.807654
iter 30 value 91.308167
iter 40 value 88.672091
iter 50 value 85.466051
iter 60 value 84.747448
iter 70 value 83.464279
iter 80 value 83.103773
iter 90 value 83.074718
iter 100 value 82.712772
final value 82.712772
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 105.697602
iter 10 value 97.315215
iter 20 value 93.170543
iter 30 value 88.306007
iter 40 value 84.449457
iter 50 value 83.902353
iter 60 value 82.372660
iter 70 value 82.013039
iter 80 value 81.919555
iter 90 value 81.847383
iter 100 value 81.832903
final value 81.832903
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 142.804851
iter 10 value 95.558396
iter 20 value 93.065776
iter 30 value 85.882228
iter 40 value 84.829838
iter 50 value 84.605938
iter 60 value 84.047791
iter 70 value 83.461798
iter 80 value 81.922808
iter 90 value 81.658054
iter 100 value 81.510348
final value 81.510348
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 130.398090
iter 10 value 94.329144
iter 20 value 89.285675
iter 30 value 84.172158
iter 40 value 83.656994
iter 50 value 83.230339
iter 60 value 82.892331
iter 70 value 82.811072
iter 80 value 82.708547
iter 90 value 82.454273
iter 100 value 82.390710
final value 82.390710
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 119.809743
iter 10 value 95.032238
iter 20 value 88.846745
iter 30 value 85.140968
iter 40 value 83.844759
iter 50 value 83.204776
iter 60 value 82.396899
iter 70 value 82.034271
iter 80 value 81.885496
iter 90 value 81.604016
iter 100 value 81.496756
final value 81.496756
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 98.624646
final value 94.485875
converged
Fitting Repeat 2
# weights: 103
initial value 99.431428
final value 94.485716
converged
Fitting Repeat 3
# weights: 103
initial value 108.820633
final value 94.485545
converged
Fitting Repeat 4
# weights: 103
initial value 103.628177
final value 94.486042
converged
Fitting Repeat 5
# weights: 103
initial value 107.599382
final value 94.485651
converged
Fitting Repeat 1
# weights: 305
initial value 109.345216
iter 10 value 94.489142
iter 20 value 94.297723
iter 30 value 91.623374
iter 40 value 91.529551
iter 50 value 90.531219
iter 60 value 90.527439
iter 70 value 90.526414
iter 80 value 90.526175
iter 90 value 90.524797
final value 90.524112
converged
Fitting Repeat 2
# weights: 305
initial value 99.512920
iter 10 value 94.488563
iter 20 value 94.484226
final value 94.484221
converged
Fitting Repeat 3
# weights: 305
initial value 115.696724
iter 10 value 94.489426
iter 20 value 94.422194
iter 30 value 94.278361
iter 40 value 94.275424
iter 50 value 89.690662
iter 60 value 88.010140
iter 70 value 86.481915
iter 80 value 86.395421
iter 90 value 83.165211
iter 100 value 82.891278
final value 82.891278
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 106.406214
iter 10 value 94.270092
iter 20 value 94.210465
iter 30 value 89.153553
iter 40 value 89.146577
iter 50 value 89.144882
iter 60 value 86.492851
iter 70 value 86.230125
final value 86.228832
converged
Fitting Repeat 5
# weights: 305
initial value 103.401254
iter 10 value 94.489717
iter 20 value 94.479138
iter 30 value 86.368877
iter 40 value 85.463279
final value 85.462746
converged
Fitting Repeat 1
# weights: 507
initial value 97.039566
iter 10 value 94.491518
iter 20 value 94.463659
iter 30 value 86.640580
final value 86.639271
converged
Fitting Repeat 2
# weights: 507
initial value 112.908451
iter 10 value 94.492225
iter 20 value 94.437869
iter 30 value 94.433375
iter 40 value 94.391739
iter 50 value 94.387469
iter 60 value 94.200551
final value 94.183086
converged
Fitting Repeat 3
# weights: 507
initial value 127.759205
iter 10 value 94.283922
iter 20 value 94.240880
iter 30 value 86.887251
iter 40 value 86.632877
iter 50 value 86.008776
iter 60 value 85.826469
iter 70 value 85.823877
iter 80 value 85.758986
iter 90 value 85.753678
final value 85.753506
converged
Fitting Repeat 4
# weights: 507
initial value 94.921664
iter 10 value 94.491132
iter 20 value 94.405326
iter 30 value 84.404654
iter 40 value 83.648202
iter 50 value 83.641406
iter 60 value 83.641177
iter 70 value 83.199168
iter 80 value 82.746007
iter 90 value 82.385538
iter 100 value 81.141136
final value 81.141136
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 97.046406
iter 10 value 94.491157
iter 20 value 93.185330
iter 30 value 86.624782
iter 40 value 86.242139
iter 50 value 86.228558
iter 60 value 85.605552
iter 70 value 85.017872
iter 80 value 84.697687
iter 90 value 84.694582
iter 100 value 84.690654
final value 84.690654
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 96.456963
final value 94.032967
converged
Fitting Repeat 2
# weights: 103
initial value 105.747187
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 96.877321
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 102.742270
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 101.789548
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 97.558038
iter 10 value 93.420463
iter 20 value 93.224260
iter 30 value 93.156057
final value 93.155651
converged
Fitting Repeat 2
# weights: 305
initial value 100.974420
final value 94.032967
converged
Fitting Repeat 3
# weights: 305
initial value 103.154678
iter 10 value 91.114791
iter 20 value 85.303692
iter 30 value 85.250030
iter 40 value 85.208210
iter 50 value 85.185284
final value 85.185261
converged
Fitting Repeat 4
# weights: 305
initial value 114.312940
final value 94.052910
converged
Fitting Repeat 5
# weights: 305
initial value 97.162448
final value 94.052916
converged
Fitting Repeat 1
# weights: 507
initial value 118.174347
iter 10 value 93.899641
iter 20 value 93.860354
iter 30 value 92.846869
iter 40 value 83.911079
iter 50 value 81.607069
iter 60 value 81.521348
iter 70 value 81.519525
iter 70 value 81.519524
final value 81.519524
converged
Fitting Repeat 2
# weights: 507
initial value 111.923349
iter 10 value 94.004476
final value 93.991525
converged
Fitting Repeat 3
# weights: 507
initial value 109.095670
final value 94.052910
converged
Fitting Repeat 4
# weights: 507
initial value 125.349761
iter 10 value 84.056023
iter 20 value 83.701563
iter 30 value 83.674850
iter 40 value 83.294140
iter 50 value 83.238778
final value 83.238766
converged
Fitting Repeat 5
# weights: 507
initial value 103.899748
iter 10 value 87.092293
iter 20 value 86.474964
iter 30 value 86.471269
final value 86.471250
converged
Fitting Repeat 1
# weights: 103
initial value 100.103006
iter 10 value 94.064979
iter 20 value 86.217198
iter 30 value 84.660125
iter 40 value 82.759570
iter 50 value 82.172670
iter 60 value 82.069267
iter 70 value 81.246535
iter 80 value 79.790295
iter 90 value 79.740290
iter 100 value 79.726744
final value 79.726744
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 96.653079
iter 10 value 94.085588
iter 20 value 89.262827
iter 30 value 86.138026
iter 40 value 85.254741
iter 50 value 84.647036
iter 60 value 84.122808
iter 70 value 83.997949
final value 83.997820
converged
Fitting Repeat 3
# weights: 103
initial value 104.348858
iter 10 value 93.834789
iter 20 value 84.159239
iter 30 value 83.706715
iter 40 value 82.247737
iter 50 value 81.665790
iter 60 value 81.525129
iter 70 value 81.416553
iter 80 value 80.984570
iter 90 value 79.221914
final value 79.220683
converged
Fitting Repeat 4
# weights: 103
initial value 102.116558
iter 10 value 93.760319
iter 20 value 84.444684
iter 30 value 82.811968
iter 40 value 82.526352
iter 50 value 81.262088
iter 60 value 80.759745
iter 70 value 80.400878
iter 80 value 79.589819
final value 79.587286
converged
Fitting Repeat 5
# weights: 103
initial value 101.875998
iter 10 value 94.025163
iter 20 value 93.493169
iter 30 value 92.931094
iter 40 value 86.989760
iter 50 value 84.494407
iter 60 value 83.583451
iter 70 value 82.824086
iter 80 value 81.868101
iter 90 value 81.549599
iter 100 value 81.261678
final value 81.261678
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 102.890729
iter 10 value 94.467551
iter 20 value 94.004113
iter 30 value 91.915056
iter 40 value 90.449882
iter 50 value 88.403687
iter 60 value 82.841275
iter 70 value 82.754838
iter 80 value 82.618250
iter 90 value 80.367547
iter 100 value 79.089078
final value 79.089078
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 108.399827
iter 10 value 90.056862
iter 20 value 85.982972
iter 30 value 85.232412
iter 40 value 81.438172
iter 50 value 80.368707
iter 60 value 80.086389
iter 70 value 79.947851
iter 80 value 79.305610
iter 90 value 77.935889
iter 100 value 77.504407
final value 77.504407
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 103.557411
iter 10 value 94.052917
iter 20 value 93.439517
iter 30 value 93.320343
iter 40 value 87.390148
iter 50 value 80.872546
iter 60 value 79.360005
iter 70 value 78.033183
iter 80 value 77.794449
iter 90 value 77.733390
iter 100 value 77.710311
final value 77.710311
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 125.935486
iter 10 value 93.743995
iter 20 value 90.517443
iter 30 value 90.077727
iter 40 value 86.529076
iter 50 value 84.377555
iter 60 value 83.862528
iter 70 value 82.499507
iter 80 value 80.433242
iter 90 value 79.388627
iter 100 value 79.283383
final value 79.283383
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 101.453166
iter 10 value 86.373313
iter 20 value 84.265946
iter 30 value 83.771850
iter 40 value 83.402712
iter 50 value 81.021018
iter 60 value 80.396943
iter 70 value 79.880526
iter 80 value 79.689223
iter 90 value 79.384726
iter 100 value 78.961748
final value 78.961748
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 150.096355
iter 10 value 94.516393
iter 20 value 88.219019
iter 30 value 86.070551
iter 40 value 82.410111
iter 50 value 81.978679
iter 60 value 79.975355
iter 70 value 78.362284
iter 80 value 78.159590
iter 90 value 77.741823
iter 100 value 77.652837
final value 77.652837
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 127.892569
iter 10 value 94.120316
iter 20 value 91.567210
iter 30 value 91.182358
iter 40 value 91.086779
iter 50 value 90.975062
iter 60 value 84.646694
iter 70 value 81.890334
iter 80 value 81.744904
iter 90 value 79.872456
iter 100 value 79.119756
final value 79.119756
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 107.300543
iter 10 value 94.426334
iter 20 value 86.527408
iter 30 value 85.091207
iter 40 value 82.923431
iter 50 value 80.852651
iter 60 value 79.967344
iter 70 value 79.898033
iter 80 value 79.849409
iter 90 value 79.529933
iter 100 value 77.910693
final value 77.910693
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 110.003995
iter 10 value 94.501549
iter 20 value 93.873024
iter 30 value 83.109691
iter 40 value 81.357452
iter 50 value 80.097242
iter 60 value 79.350970
iter 70 value 79.092733
iter 80 value 77.935813
iter 90 value 77.377213
iter 100 value 77.175868
final value 77.175868
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 116.329140
iter 10 value 94.530751
iter 20 value 87.055393
iter 30 value 85.015504
iter 40 value 82.818991
iter 50 value 79.668461
iter 60 value 78.592561
iter 70 value 78.261861
iter 80 value 78.099982
iter 90 value 77.967206
iter 100 value 77.928052
final value 77.928052
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 95.647011
final value 93.917386
converged
Fitting Repeat 2
# weights: 103
initial value 98.027264
iter 10 value 94.054760
final value 94.052912
converged
Fitting Repeat 3
# weights: 103
initial value 100.227385
final value 94.054645
converged
Fitting Repeat 4
# weights: 103
initial value 104.472656
iter 10 value 94.054514
iter 20 value 94.052975
final value 94.052919
converged
Fitting Repeat 5
# weights: 103
initial value 107.188717
iter 10 value 93.917210
iter 20 value 93.916143
iter 30 value 93.367001
iter 40 value 83.777920
iter 50 value 83.365802
iter 60 value 83.095139
iter 70 value 83.059321
final value 83.059308
converged
Fitting Repeat 1
# weights: 305
initial value 100.348662
iter 10 value 93.937007
iter 20 value 93.282128
iter 30 value 93.264659
iter 40 value 93.196705
iter 50 value 91.419386
iter 60 value 83.906287
iter 70 value 82.795871
iter 80 value 82.786464
iter 90 value 82.780583
iter 100 value 82.333306
final value 82.333306
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 95.881066
iter 10 value 94.057894
iter 20 value 94.052984
iter 30 value 93.704631
iter 40 value 89.561079
iter 50 value 89.541846
iter 60 value 89.538965
iter 70 value 86.031806
iter 80 value 82.998171
iter 90 value 82.609017
iter 100 value 82.600004
final value 82.600004
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 106.316130
iter 10 value 94.057712
iter 20 value 94.052968
iter 30 value 90.572000
iter 40 value 85.703572
iter 50 value 85.677010
final value 85.676876
converged
Fitting Repeat 4
# weights: 305
initial value 96.561205
iter 10 value 94.057220
iter 20 value 84.046751
iter 30 value 83.601148
iter 40 value 83.529469
iter 50 value 80.995537
iter 60 value 79.924934
iter 70 value 79.839999
final value 79.839961
converged
Fitting Repeat 5
# weights: 305
initial value 104.780112
iter 10 value 94.058235
iter 20 value 93.994168
iter 30 value 84.958362
iter 30 value 84.958361
iter 30 value 84.958361
final value 84.958361
converged
Fitting Repeat 1
# weights: 507
initial value 107.074827
iter 10 value 93.354130
iter 20 value 93.349101
iter 30 value 93.256917
iter 40 value 93.256782
iter 50 value 93.092844
iter 60 value 88.898313
iter 70 value 81.244787
iter 80 value 80.656200
iter 90 value 80.649221
iter 100 value 80.647602
final value 80.647602
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 103.950910
iter 10 value 94.061009
iter 20 value 94.053147
iter 30 value 93.987576
final value 93.916064
converged
Fitting Repeat 3
# weights: 507
initial value 109.527302
iter 10 value 93.321974
iter 20 value 93.222177
iter 30 value 91.634183
iter 40 value 83.011431
iter 50 value 80.692748
iter 60 value 80.691747
iter 70 value 80.445146
iter 80 value 79.968412
iter 90 value 79.807421
iter 100 value 79.806186
final value 79.806186
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 113.529343
iter 10 value 94.054137
iter 20 value 93.901193
iter 30 value 93.899026
iter 40 value 93.896170
iter 50 value 93.892243
iter 60 value 84.518072
iter 70 value 84.086725
iter 80 value 84.085861
iter 90 value 84.081023
iter 100 value 84.069496
final value 84.069496
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 105.090222
iter 10 value 94.059899
iter 20 value 94.006297
iter 30 value 93.373807
iter 40 value 91.452516
iter 50 value 82.963580
iter 60 value 81.637251
iter 70 value 80.839031
iter 80 value 80.516200
iter 90 value 80.480589
final value 80.480525
converged
Fitting Repeat 1
# weights: 103
initial value 120.512273
iter 10 value 117.884121
iter 20 value 108.038527
iter 30 value 106.051590
iter 30 value 106.051589
final value 106.051589
converged
Fitting Repeat 2
# weights: 103
initial value 122.372411
iter 10 value 117.894546
iter 20 value 115.759112
iter 30 value 110.976808
iter 40 value 109.464872
iter 50 value 109.247724
iter 60 value 108.056799
iter 70 value 106.031543
iter 80 value 105.947062
iter 90 value 105.799225
iter 100 value 105.290948
final value 105.290948
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 121.564716
iter 10 value 117.928579
iter 20 value 117.893674
iter 30 value 117.662618
iter 40 value 117.580602
iter 50 value 110.137479
iter 60 value 108.949910
iter 70 value 105.953847
iter 80 value 105.538027
iter 90 value 105.288991
iter 100 value 105.258365
final value 105.258365
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 124.342076
iter 10 value 117.894514
iter 20 value 112.037344
iter 30 value 107.461594
iter 40 value 105.620264
iter 50 value 105.275893
iter 60 value 104.825537
iter 70 value 104.767470
iter 80 value 103.817036
iter 90 value 102.609965
iter 100 value 102.515088
final value 102.515088
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 129.570771
iter 10 value 117.661794
iter 20 value 113.636368
iter 30 value 111.649851
iter 40 value 111.512151
iter 50 value 109.695196
iter 60 value 107.033157
iter 70 value 105.265126
iter 80 value 103.903322
iter 90 value 103.281840
iter 100 value 102.513567
final value 102.513567
stopped after 100 iterations
svmRadial
ranger
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
RUNIT TEST PROTOCOL -- Fri May 15 00:55:31 2026
***********************************************
Number of test functions: 7
Number of errors: 0
Number of failures: 0
1 Test Suite :
HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures
Number of test functions: 7
Number of errors: 0
Number of failures: 0
Warning messages:
1: `repeats` has no meaning for this resampling method.
2: executing %dopar% sequentially: no parallel backend registered
>
>
>
>
> proc.time()
user system elapsed
39.775 0.874 90.122
HPiP.Rcheck/HPiP-Ex.timings
| name | user | system | elapsed | |
| FSmethod | 34.830 | 0.509 | 36.468 | |
| FreqInteractors | 0.419 | 0.032 | 0.450 | |
| calculateAAC | 0.032 | 0.000 | 0.033 | |
| calculateAutocor | 0.256 | 0.014 | 0.271 | |
| calculateCTDC | 0.070 | 0.001 | 0.071 | |
| calculateCTDD | 0.461 | 0.000 | 0.461 | |
| calculateCTDT | 0.131 | 0.000 | 0.131 | |
| calculateCTriad | 0.382 | 0.002 | 0.384 | |
| calculateDC | 0.082 | 0.001 | 0.084 | |
| calculateF | 0.293 | 0.002 | 0.296 | |
| calculateKSAAP | 0.089 | 0.003 | 0.093 | |
| calculateQD_Sm | 1.762 | 0.083 | 1.846 | |
| calculateTC | 1.479 | 0.033 | 1.512 | |
| calculateTC_Sm | 0.279 | 0.019 | 0.298 | |
| corr_plot | 33.966 | 0.441 | 34.491 | |
| enrichfindP | 0.531 | 0.031 | 17.364 | |
| enrichfind_hp | 0.072 | 0.000 | 1.896 | |
| enrichplot | 0.490 | 0.007 | 0.497 | |
| filter_missing_values | 0.001 | 0.000 | 0.001 | |
| getFASTA | 0.480 | 0.038 | 3.913 | |
| getHPI | 0.001 | 0.000 | 0.001 | |
| get_negativePPI | 0.002 | 0.001 | 0.003 | |
| get_positivePPI | 0 | 0 | 0 | |
| impute_missing_data | 0.002 | 0.001 | 0.002 | |
| plotPPI | 0.101 | 0.002 | 0.103 | |
| pred_ensembel | 13.103 | 0.156 | 12.002 | |
| var_imp | 34.150 | 0.482 | 34.661 | |