Back to Rapid builds (Linux only) of a subset of BioC 3.23
Report updated every 6 hours

This page was generated on 2025-12-09 13:17 -0500 (Tue, 09 Dec 2025).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2025-10-28 r88973) -- "Unsuffered Consequences" 925
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 4/230HostnameOS / ArchINSTALLBUILDCHECK
affyPLM 1.87.0  (landing page)
Ben Bolstad
Snapshot Date: 2025-12-09 12:00 -0500 (Tue, 09 Dec 2025)
git_url: https://git.bioconductor.org/packages/affyPLM
git_branch: devel
git_last_commit: 53a03e9
git_last_commit_date: 2025-10-29 09:53:58 -0500 (Wed, 29 Oct 2025)
teran2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped


BUILD results for affyPLM on teran2

To the developers/maintainers of the affyPLM package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: affyPLM
Version: 1.87.0
Command: /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data affyPLM
StartedAt: 2025-12-09 12:24:05 -0500 (Tue, 09 Dec 2025)
EndedAt: 2025-12-09 12:24:06 -0500 (Tue, 09 Dec 2025)
EllapsedTime: 1.6 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data affyPLM
###
##############################################################################
##############################################################################


* checking for file ‘affyPLM/DESCRIPTION’ ... OK
* preparing ‘affyPLM’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
      -----------------------------------
* installing *source* package ‘affyPLM’ ...
** this is package ‘affyPLM’ version ‘1.87.0’
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
gcc -std=gnu2x -I"/home/rapidbuild/bbs-3.23-bioc-rapid/R/include" -DNDEBUG  -I'/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/R/site-library/preprocessCore/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security -c LESN.c -o LESN.o
gcc -std=gnu2x -I"/home/rapidbuild/bbs-3.23-bioc-rapid/R/include" -DNDEBUG  -I'/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/R/site-library/preprocessCore/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security -c PLM_avg_log.c -o PLM_avg_log.o
PLM_avg_log.c:91:1: fatal error: error writing to /tmp/ccw8kSVa.s: No space left on device
   91 | }
      | ^
compilation terminated.
make: *** [/home/rapidbuild/bbs-3.23-bioc-rapid/R/etc/Makeconf:202: PLM_avg_log.o] Error 1
ERROR: compilation failed for package ‘affyPLM’
* removing ‘/tmp/Rtmp8nWKUr/Rinst1f9d42625d89f0/affyPLM’
      -----------------------------------
ERROR: package installation failed