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This page was generated on 2025-12-09 13:17 -0500 (Tue, 09 Dec 2025).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2025-10-28 r88973) -- "Unsuffered Consequences" 925
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Package 128/230HostnameOS / ArchINSTALLBUILDCHECK
IRanges 2.45.0  (landing page)
Hervé Pagès
Snapshot Date: 2025-12-09 12:00 -0500 (Tue, 09 Dec 2025)
git_url: https://git.bioconductor.org/packages/IRanges
git_branch: devel
git_last_commit: 167f22b
git_last_commit_date: 2025-10-29 14:51:39 -0500 (Wed, 29 Oct 2025)
teran2Linux (Ubuntu 24.04.3 LTS) / x86_64  ERROR    ERROR  skipped

BUILD results for IRanges on teran2

To the developers/maintainers of the IRanges package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: IRanges
Version: 2.45.0
Command: /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data IRanges
StartedAt: 2025-12-09 12:40:06 -0500 (Tue, 09 Dec 2025)
EndedAt: 2025-12-09 12:40:09 -0500 (Tue, 09 Dec 2025)
EllapsedTime: 2.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data IRanges
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* checking for file ‘IRanges/DESCRIPTION’ ... OK
* preparing ‘IRanges’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
      -----------------------------------
* installing *source* package ‘IRanges’ ...
** this is package ‘IRanges’ version ‘2.45.0’
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
gcc -std=gnu2x -I"/home/rapidbuild/bbs-3.23-bioc-rapid/R/include" -DNDEBUG  -I'/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/R/site-library/S4Vectors/include' -I/usr/local/include   -fopenmp -fpic  -g -O2  -Wall -Werror=format-security -c CompressedAtomicList_utils.c -o CompressedAtomicList_utils.o
gcc -std=gnu2x -I"/home/rapidbuild/bbs-3.23-bioc-rapid/R/include" -DNDEBUG  -I'/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/R/site-library/S4Vectors/include' -I/usr/local/include   -fopenmp -fpic  -g -O2  -Wall -Werror=format-security -c CompressedIRangesList_class.c -o CompressedIRangesList_class.o
gcc -std=gnu2x -I"/home/rapidbuild/bbs-3.23-bioc-rapid/R/include" -DNDEBUG  -I'/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/R/site-library/S4Vectors/include' -I/usr/local/include   -fopenmp -fpic  -g -O2  -Wall -Werror=format-security -c CompressedList_class.c -o CompressedList_class.o
gcc -std=gnu2x -I"/home/rapidbuild/bbs-3.23-bioc-rapid/R/include" -DNDEBUG  -I'/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/R/site-library/S4Vectors/include' -I/usr/local/include   -fopenmp -fpic  -g -O2  -Wall -Werror=format-security -c Grouping_class.c -o Grouping_class.o
gcc -std=gnu2x -I"/home/rapidbuild/bbs-3.23-bioc-rapid/R/include" -DNDEBUG  -I'/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/R/site-library/S4Vectors/include' -I/usr/local/include   -fopenmp -fpic  -g -O2  -Wall -Werror=format-security -c IPosRanges_comparison.c -o IPosRanges_comparison.o
gcc -std=gnu2x -I"/home/rapidbuild/bbs-3.23-bioc-rapid/R/include" -DNDEBUG  -I'/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/R/site-library/S4Vectors/include' -I/usr/local/include   -fopenmp -fpic  -g -O2  -Wall -Werror=format-security -c IRanges_class.c -o IRanges_class.o
gcc -std=gnu2x -I"/home/rapidbuild/bbs-3.23-bioc-rapid/R/include" -DNDEBUG  -I'/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/R/site-library/S4Vectors/include' -I/usr/local/include   -fopenmp -fpic  -g -O2  -Wall -Werror=format-security -c IRanges_constructor.c -o IRanges_constructor.o
gcc -std=gnu2x -I"/home/rapidbuild/bbs-3.23-bioc-rapid/R/include" -DNDEBUG  -I'/media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/R/site-library/S4Vectors/include' -I/usr/local/include   -fopenmp -fpic  -g -O2  -Wall -Werror=format-security -c NCList.c -o NCList.o
NCList.c:1303:13: warning: ‘NCList_get_y_overlaps_rec’ defined but not used [-Wunused-function]
 1303 | static void NCList_get_y_overlaps_rec(const NCList *x_nclist,
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~
NCList.c:203:22: warning: ‘next_top_down’ defined but not used [-Wunused-function]
  203 | static const NCList *next_top_down(NCListWalkingStack *stack,
      |                      ^~~~~~~~~~~~~
NCList.c: In function ‘C_find_overlaps_in_groups_NCList’:
NCList.c:1782:24: warning: ‘ans’ may be used uninitialized [-Wmaybe-uninitialized]
 1782 |                 return ans;
      |                        ^~~
NCList.c:1751:14: note: ‘ans’ was declared here
 1751 |         SEXP ans;
      |              ^~~
NCList.c: At top level:
NCList.c:1787:1: fatal error: error writing to /tmp/ccyHSQeZ.s: No space left on device
 1787 | }
      | ^
compilation terminated.
make: *** [/home/rapidbuild/bbs-3.23-bioc-rapid/R/etc/Makeconf:202: NCList.o] Error 1
ERROR: compilation failed for package ‘IRanges’
* removing ‘/tmp/RtmpgdLhbM/Rinst203343562849ea/IRanges’
      -----------------------------------
ERROR: package installation failed