##############################################################################
##############################################################################
###
### Running command:
###
###   /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data GOstats
###
##############################################################################
##############################################################################


* checking for file ‘GOstats/DESCRIPTION’ ... OK
* preparing ‘GOstats’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘GOstatsForUnsupportedOrganisms.Rmd’ using rmarkdown
Warning: call dbDisconnect() when finished working with a connection

Quitting from GOstatsForUnsupportedOrganisms.Rmd:71-74 [transformGOFrame]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! database or disk is full
---
Backtrace:
     ▆
  1. ├─AnnotationDbi::GOAllFrame(goFrame)
  2. └─AnnotationDbi::GOAllFrame(goFrame)
  3.   └─AnnotationDbi:::.convertGOtoGO2ALL(x@data, "BP")
  4.     ├─DBI::dbExecute(con, "CREATE INDEX gdgo on go_data(go_id)")
  5.     └─DBI::dbExecute(con, "CREATE INDEX gdgo on go_data(go_id)")
  6.       ├─DBI::dbSendStatement(conn, statement, ...)
  7.       └─DBI::dbSendStatement(conn, statement, ...)
  8.         ├─DBI::dbSendQuery(conn, statement, ...)
  9.         └─RSQLite::dbSendQuery(conn, statement, ...)
 10.           └─RSQLite (local) .local(conn, statement, ...)
 11.             ├─methods::new(...)
 12.             │ ├─methods::initialize(value, ...)
 13.             │ └─methods::initialize(value, ...)
 14.             └─RSQLite:::result_create(conn@ptr, statement)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'GOstatsForUnsupportedOrganisms.Rmd' failed with diagnostics:
database or disk is full
--- failed re-building ‘GOstatsForUnsupportedOrganisms.Rmd’

--- re-building ‘GOstatsHyperG.Rmd’ using rmarkdown
Error: processing vignette 'GOstatsHyperG.Rmd' failed with diagnostics:
Error writing to connection:  No space left on device
--- failed re-building ‘GOstatsHyperG.Rmd’

--- re-building ‘GOvis.Rmd’ using rmarkdown
Warning in close.connection(con) :
  Problem closing connection:  No space left on device
Warning in close.connection(con) :
  Problem closing connection:  No space left on device
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  "nodeAttrs" is not a graphical parameter
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  zero-length arrow is of indeterminate angle and so skipped
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  zero-length arrow is of indeterminate angle and so skipped
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  zero-length arrow is of indeterminate angle and so skipped
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  zero-length arrow is of indeterminate angle and so skipped
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  zero-length arrow is of indeterminate angle and so skipped
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  zero-length arrow is of indeterminate angle and so skipped
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  zero-length arrow is of indeterminate angle and so skipped
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  zero-length arrow is of indeterminate angle and so skipped
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  zero-length arrow is of indeterminate angle and so skipped
Killed