Back to Rapid builds (Linux only) of a subset of BioC 3.23
Report updated every 6 hours

This page was generated on 2025-12-10 13:07 -0500 (Wed, 10 Dec 2025).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2025-10-28 r88973) -- "Unsuffered Consequences" 925
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 46/230HostnameOS / ArchINSTALLBUILDCHECK
BSgenome 1.79.1  (landing page)
Hervé Pagès
Snapshot Date: 2025-12-10 12:00 -0500 (Wed, 10 Dec 2025)
git_url: https://git.bioconductor.org/packages/BSgenome
git_branch: devel
git_last_commit: c2fc0db
git_last_commit_date: 2025-11-03 17:15:06 -0500 (Mon, 03 Nov 2025)
teran2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped

BUILD results for BSgenome on teran2

To the developers/maintainers of the BSgenome package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: BSgenome
Version: 1.79.1
Command: /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data BSgenome
StartedAt: 2025-12-10 12:23:10 -0500 (Wed, 10 Dec 2025)
EndedAt: 2025-12-10 12:23:10 -0500 (Wed, 10 Dec 2025)
EllapsedTime: 0.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data BSgenome
###
##############################################################################
##############################################################################


* checking for file ‘BSgenome/DESCRIPTION’ ... OK
cp: error writing '/tmp/RtmpsG9SjI/Rbuild2b7517421415f8/BSgenome/inst/extdata/ce2chrX.fa.gz': No space left on device
cp: error writing '/tmp/RtmpsG9SjI/Rbuild2b7517421415f8/BSgenome/inst/extdata/ce2dict0.fa': No space left on device
cp: cannot create directory '/tmp/RtmpsG9SjI/Rbuild2b7517421415f8/BSgenome/man': No space left on device
cp: cannot create directory '/tmp/RtmpsG9SjI/Rbuild2b7517421415f8/BSgenome/vignettes': No space left on device
 ERROR
copying to build directory failed