| Back to Long Tests report for BioC 3.23 |
This page was generated on 2025-12-20 23:55 -0500 (Sat, 20 Dec 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" | 4878 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 22/28 | Hostname | OS / Arch | CHECK | |||||||
| mosdef 1.7.0 (landing page) Federico Marini
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | ERROR | |||||||
|
To the developers/maintainers of the mosdef package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: mosdef |
| Version: 1.7.0 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no mosdef_1.7.0.tar.gz |
| StartedAt: 2025-12-20 16:20:35 -0500 (Sat, 20 Dec 2025) |
| EndedAt: 2025-12-20 16:20:50 -0500 (Sat, 20 Dec 2025) |
| EllapsedTime: 15.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| CheckDir: mosdef.Rcheck |
| Warnings: NA |
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### Running command:
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### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no mosdef_1.7.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.23-bioc-longtests/meat/mosdef.Rcheck’
* using R Under development (unstable) (2025-10-20 r88955)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘mosdef/DESCRIPTION’ ... OK
* this is package ‘mosdef’ version ‘1.7.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
.BBSoptions
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘mosdef’ can be installed ... ERROR
Installation failed.
See ‘/home/biocbuild/bbs-3.23-bioc-longtests/meat/mosdef.Rcheck/00install.out’ for details.
* DONE
Status: 1 ERROR, 1 NOTE
See
‘/home/biocbuild/bbs-3.23-bioc-longtests/meat/mosdef.Rcheck/00check.log’
for details.
mosdef.Rcheck/00install.out
* installing *source* package ‘mosdef’ ... ** this is package ‘mosdef’ version ‘1.7.0’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading Error: object ‘load_OrgDb’ is not exported by 'namespace:GOSemSim' Execution halted ERROR: lazy loading failed for package ‘mosdef’ * removing ‘/home/biocbuild/bbs-3.23-bioc-longtests/meat/mosdef.Rcheck/mosdef’