Colin A. Smith
| Snapshot Date: 2025-11-12 13:40 -0500 (Wed, 12 Nov 2025) |
| git_url: https://git.bioconductor.org/packages/webbioc |
| git_branch: devel |
| git_last_commit: 8bbf95c |
| git_last_commit_date: 2025-10-29 09:54:04 -0500 (Wed, 29 Oct 2025) |
| Back to Build/check report for BioC 3.23: simplified long |
|
This page was generated on 2025-11-13 11:32 -0500 (Thu, 13 Nov 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences" | 4013 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2299/2325 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| webbioc 1.83.0 (landing page) Colin A. Smith
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | | |||||||
|
To the developers/maintainers of the webbioc package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/webbioc.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: webbioc |
| Version: 1.83.0 |
| Command: rm -rf webbioc.buildbin-libdir && mkdir webbioc.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh webbioc_1.83.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R webbioc.buildbin-libdir |
| StartedAt: 2025-11-12 21:13:58 -0500 (Wed, 12 Nov 2025) |
| EndedAt: 2025-11-12 21:48:40 -0500 (Wed, 12 Nov 2025) |
| EllapsedTime: 2082.7 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: webbioc_1.83.0.tgz |
| PackageFileSize: 310.8 KiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf webbioc.buildbin-libdir && mkdir webbioc.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh webbioc_1.83.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R webbioc.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=webbioc.buildbin-libdir webbioc_1.83.0.tar.gz' >>>>>>> * installing *source* package ‘webbioc’ ... ** this is package ‘webbioc’ version ‘1.83.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Warning messages: 1: In download.file(..., destfile = tmp_config, quiet = TRUE) : URL 'https://bioconductor.org/config.yaml': status was 'SSL connect error' 2: In download.file(..., destfile = tmp_config, quiet = TRUE) : downloaded length 0 != reported length 2416 3: In download.file(..., destfile = tmp_config, quiet = TRUE) : cannot open URL 'http://bioconductor.org/config.yaml': HTTP status was '504 Gateway Timeout' ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning in download.file(..., destfile = tmp_config, quiet = TRUE) : URL 'https://bioconductor.org/config.yaml': status was 'SSL connect error' Warning in download.file(..., destfile = tmp_config, quiet = TRUE) : URL 'https://bioconductor.org/config.yaml': status was 'SSL connect error' ** testing if installed package can be loaded from final location Warning in download.file(..., destfile = tmp_config, quiet = TRUE) : URL 'https://bioconductor.org/config.yaml': status was 'SSL connect error' Warning in download.file(..., destfile = tmp_config, quiet = TRUE) : downloaded length 0 != reported length 2416 Warning in download.file(..., destfile = tmp_config, quiet = TRUE) : cannot open URL 'http://bioconductor.org/config.yaml': HTTP status was '504 Gateway Timeout' ** testing if installed package keeps a record of temporary installation path * DONE (webbioc)