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This page was generated on 2026-03-11 11:33 -0400 (Wed, 11 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" | 4719 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-03-01 r89506) -- "Unsuffered Consequences" | 2847 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2296/2360 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| universalmotif 1.29.0 (landing page) Benjamin Jean-Marie Tremblay
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| See other builds for universalmotif in R Universe. | ||||||||||||||
|
To the developers/maintainers of the universalmotif package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/universalmotif.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: universalmotif |
| Version: 1.29.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data universalmotif |
| StartedAt: 2026-03-10 15:43:23 -0400 (Tue, 10 Mar 2026) |
| EndedAt: 2026-03-10 15:44:09 -0400 (Tue, 10 Mar 2026) |
| EllapsedTime: 46.7 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data universalmotif
###
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* checking for file ‘universalmotif/DESCRIPTION’ ... OK
* preparing ‘universalmotif’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘Introduction.Rmd’ using rmarkdown
--- finished re-building ‘Introduction.Rmd’
--- re-building ‘IntroductionToSequenceMotifs.Rmd’ using rmarkdown
--- finished re-building ‘IntroductionToSequenceMotifs.Rmd’
--- re-building ‘MotifComparisonAndPvalues.Rmd’ using rmarkdown
Quitting from MotifComparisonAndPvalues.Rmd:17-28 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'MotifDb'
---
Backtrace:
x
1. +-base::suppressMessages(suppressPackageStartupMessages(library(MotifDb)))
2. | \-base::withCallingHandlers(...)
3. +-base::suppressPackageStartupMessages(library(MotifDb))
4. | \-base::withCallingHandlers(expr, packageStartupMessage = function(c) tryInvokeRestart("muffleMessage"))
5. \-base::library(MotifDb)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'MotifComparisonAndPvalues.Rmd' failed with diagnostics:
there is no package called 'MotifDb'
--- failed re-building ‘MotifComparisonAndPvalues.Rmd’
--- re-building ‘MotifManipulation.Rmd’ using rmarkdown
Quitting from MotifManipulation.Rmd:18-25 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'MotifDb'
---
Backtrace:
x
1. +-base::suppressMessages(suppressPackageStartupMessages(library(MotifDb)))
2. | \-base::withCallingHandlers(...)
3. +-base::suppressPackageStartupMessages(library(MotifDb))
4. | \-base::withCallingHandlers(expr, packageStartupMessage = function(c) tryInvokeRestart("muffleMessage"))
5. \-base::library(MotifDb)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'MotifManipulation.Rmd' failed with diagnostics:
there is no package called 'MotifDb'
--- failed re-building ‘MotifManipulation.Rmd’
--- re-building ‘SequenceSearches.Rmd’ using rmarkdown
Quitting from SequenceSearches.Rmd:18-27 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'ggbio'
---
Backtrace:
x
1. +-base::suppressPackageStartupMessages(library(ggbio))
2. | \-base::withCallingHandlers(expr, packageStartupMessage = function(c) tryInvokeRestart("muffleMessage"))
3. \-base::library(ggbio)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'SequenceSearches.Rmd' failed with diagnostics:
there is no package called 'ggbio'
--- failed re-building ‘SequenceSearches.Rmd’
SUMMARY: processing the following files failed:
‘MotifComparisonAndPvalues.Rmd’ ‘MotifManipulation.Rmd’
‘SequenceSearches.Rmd’
Error: Vignette re-building failed.
Execution halted