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This page was generated on 2026-05-02 11:36 -0400 (Sat, 02 May 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.4 LTS)x86_644.6.0 RC (2026-04-17 r89917) -- "Because it was There" 4988
kjohnson3macOS 13.7.7 Venturaarm644.6.0 Patched (2026-04-24 r89963) -- "Because it was There" 4718
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2033/2418HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
seqsetvis 1.32.0  (landing page)
Joseph R Boyd
Snapshot Date: 2026-05-01 13:40 -0400 (Fri, 01 May 2026)
git_url: https://git.bioconductor.org/packages/seqsetvis
git_branch: RELEASE_3_23
git_last_commit: 5c54cba
git_last_commit_date: 2026-04-28 08:47:37 -0400 (Tue, 28 Apr 2026)
nebbiolo1Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
See other builds for seqsetvis in R Universe.


CHECK results for seqsetvis on kjohnson3

To the developers/maintainers of the seqsetvis package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/seqsetvis.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: seqsetvis
Version: 1.32.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:seqsetvis.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings seqsetvis_1.32.0.tar.gz
StartedAt: 2026-05-01 22:23:12 -0400 (Fri, 01 May 2026)
EndedAt: 2026-05-01 22:26:40 -0400 (Fri, 01 May 2026)
EllapsedTime: 208.6 seconds
RetCode: 0
Status:   OK  
CheckDir: seqsetvis.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:seqsetvis.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings seqsetvis_1.32.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.23-bioc/meat/seqsetvis.Rcheck’
* using R version 4.6.0 Patched (2026-04-24 r89963)
* using platform: aarch64-apple-darwin23
* R was compiled by
    Apple clang version 17.0.0 (clang-1700.3.19.1)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Tahoe 26.3.1
* using session charset: UTF-8
* current time: 2026-05-02 02:23:12 UTC
* using option ‘--no-vignettes’
* checking for file ‘seqsetvis/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘seqsetvis’ version ‘1.32.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘seqsetvis’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

seqsetvis.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL seqsetvis
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.6/Resources/library’
* installing *source* package ‘seqsetvis’ ...
** this is package ‘seqsetvis’ version ‘1.32.0’
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (seqsetvis)

Tests output

seqsetvis.Rcheck/tests/testthat.Rout


R version 4.6.0 Patched (2026-04-24 r89963) -- "Because it was There"
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin23

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> 
> ## load dependencies
> library(testthat)
> library(seqsetvis)
Loading required package: ggplot2
> library(data.table)

Attaching package: 'data.table'

The following object is masked from 'package:base':

    %notin%

> 
> ## test package
> test_check(package = "seqsetvis")
[ FAIL 0 | WARN 3 | SKIP 0 | PASS 1291 ]

[ FAIL 0 | WARN 3 | SKIP 0 | PASS 1291 ]
> 
> proc.time()
   user  system elapsed 
 81.737   0.805  82.732 

Example timings

seqsetvis.Rcheck/seqsetvis-Ex.timings

nameusersystemelapsed
add_cluster_annotation1.1750.0181.195
append_ynorm0.0190.0010.020
applyMovingAverage0.2870.0020.291
applySpline0.1400.0020.141
assemble_heatmap_cluster_bars0.2850.0020.287
calc_norm_factors0.0100.0000.011
centerAtMax0.0800.0020.081
centerFixedSizeGRanges0.0470.0030.050
centerGRangesAtMax0.1580.0030.161
clusteringKmeans0.0130.0010.014
clusteringKmeansNestedHclust0.0130.0020.015
col2hex0.0010.0000.000
collapse_gr0.2060.0050.212
convert_collapsed_coord0.0830.0040.086
copy_clust_info0.5330.0060.545
crossCorrByRle0.1430.0030.146
easyLoad_FUN0.0160.0000.016
easyLoad_IDRmerged0.0130.0010.013
easyLoad_bed0.0410.0000.041
easyLoad_broadPeak0.0110.0000.012
easyLoad_narrowPeak0.0100.0010.011
easyLoad_seacr0.0130.0000.013
expandCigar0.0460.0020.049
findMaxPos0.0130.0020.015
fragLen_calcStranded0.4800.0040.483
fragLen_fromMacs2Xls0.0010.0010.002
getReadLength0.0170.0010.018
get_mapped_reads0.0030.0000.003
ggellipse0.2680.0020.270
harmonize_seqlengths0.0450.0030.048
make_clustering_matrix0.0260.0010.028
merge_clusters1.2270.0061.234
prepare_fetch_GRanges0.0090.0010.010
prepare_fetch_GRanges_names0.0250.0010.026
prepare_fetch_GRanges_width0.0080.0000.009
quantileGRangesWidth0.0010.0010.001
reorder_clusters_hclust0.7000.0030.703
reorder_clusters_manual0.3840.0020.386
reorder_clusters_stepdown0.7140.0030.719
reverse_clusters1.1320.0061.140
safeBrew0.0080.0020.010
split_cluster0.6530.0070.663
ssvAnnotateSubjectGRanges0.2800.0080.288
ssvConsensusIntervalSets0.1000.0030.103
ssvFactorizeMembTable0.0040.0010.005
ssvFeatureBars0.2750.0020.279
ssvFeatureBinaryHeatmap2.9270.0382.973
ssvFeatureEuler0.2680.0030.273
ssvFeaturePie0.1960.0030.205
ssvFeatureUpset0.9820.0040.987
ssvFeatureVenn0.4470.0030.450
ssvFetchBam1.7320.0131.746
ssvFetchBamPE0.5910.0080.602
ssvFetchBamPE.RNA0.4800.0150.494
ssvFetchBigwig0.4160.0050.422
ssvFetchGRanges0.2320.0010.234
ssvFetchSignal0.4410.0060.448
ssvMakeMembTable-methods0.1520.0040.156
ssvOverlapIntervalSets0.0860.0040.091
ssvSignalBandedQuantiles1.2270.0121.242
ssvSignalClustering0.9660.0210.988
ssvSignalHeatmap.ClusterBars2.0030.0172.026
ssvSignalHeatmap1.8600.0231.900
ssvSignalLineplot0.9120.0050.918
ssvSignalLineplotAgg0.3380.0030.342
ssvSignalScatterplot0.3620.0040.366
viewGRangesWinSample_dt0.3700.0030.374
viewGRangesWinSummary_dt0.3570.0020.360
within_clust_sort0.5720.0040.577