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This page was generated on 2026-04-11 11:37 -0400 (Sat, 11 Apr 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.4 LTS)x86_644.6.0 alpha (2026-04-05 r89794) 4919
kjohnson3macOS 13.7.7 Venturaarm644.6.0 alpha (2026-04-08 r89818) 4631
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2008/2390HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
seqsetvis 1.31.2  (landing page)
Joseph R Boyd
Snapshot Date: 2026-04-10 13:40 -0400 (Fri, 10 Apr 2026)
git_url: https://git.bioconductor.org/packages/seqsetvis
git_branch: devel
git_last_commit: b035d64
git_last_commit_date: 2026-02-23 11:48:35 -0400 (Mon, 23 Feb 2026)
nebbiolo1Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
See other builds for seqsetvis in R Universe.


CHECK results for seqsetvis on kjohnson3

To the developers/maintainers of the seqsetvis package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/seqsetvis.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: seqsetvis
Version: 1.31.2
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:seqsetvis.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings seqsetvis_1.31.2.tar.gz
StartedAt: 2026-04-10 22:35:20 -0400 (Fri, 10 Apr 2026)
EndedAt: 2026-04-10 22:39:02 -0400 (Fri, 10 Apr 2026)
EllapsedTime: 221.7 seconds
RetCode: 0
Status:   OK  
CheckDir: seqsetvis.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:seqsetvis.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings seqsetvis_1.31.2.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.23-bioc/meat/seqsetvis.Rcheck’
* using R version 4.6.0 alpha (2026-04-08 r89818)
* using platform: aarch64-apple-darwin23
* R was compiled by
    Apple clang version 17.0.0 (clang-1700.3.19.1)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Tahoe 26.3.1
* using session charset: UTF-8
* current time: 2026-04-11 02:35:21 UTC
* using option ‘--no-vignettes’
* checking for file ‘seqsetvis/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘seqsetvis’ version ‘1.31.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘seqsetvis’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

seqsetvis.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL seqsetvis
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.6/Resources/library’
* installing *source* package ‘seqsetvis’ ...
** this is package ‘seqsetvis’ version ‘1.31.2’
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (seqsetvis)

Tests output

seqsetvis.Rcheck/tests/testthat.Rout


R version 4.6.0 alpha (2026-04-08 r89818)
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin23

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> 
> ## load dependencies
> library(testthat)
> library(seqsetvis)
Loading required package: ggplot2
> library(data.table)

Attaching package: 'data.table'

The following object is masked from 'package:base':

    %notin%

> 
> ## test package
> test_check(package = "seqsetvis")
[ FAIL 0 | WARN 3 | SKIP 0 | PASS 1291 ]

[ FAIL 0 | WARN 3 | SKIP 0 | PASS 1291 ]
> 
> proc.time()
   user  system elapsed 
 86.141   1.462  88.936 

Example timings

seqsetvis.Rcheck/seqsetvis-Ex.timings

nameusersystemelapsed
add_cluster_annotation1.1920.0181.211
append_ynorm0.0180.0010.020
applyMovingAverage0.3010.0030.305
applySpline0.1450.0030.147
assemble_heatmap_cluster_bars0.3000.0030.304
calc_norm_factors0.0100.0010.011
centerAtMax0.0860.0030.089
centerFixedSizeGRanges0.0520.0040.056
centerGRangesAtMax0.1680.0050.172
clusteringKmeans0.0120.0020.014
clusteringKmeansNestedHclust0.0140.0020.015
col2hex0.0000.0000.001
collapse_gr0.2500.0050.255
convert_collapsed_coord0.0600.0050.064
copy_clust_info0.6020.0150.636
crossCorrByRle0.1470.0060.168
easyLoad_FUN0.0180.0010.020
easyLoad_IDRmerged0.0140.0010.016
easyLoad_bed0.0420.0010.046
easyLoad_broadPeak0.0120.0010.021
easyLoad_narrowPeak0.0130.0010.014
easyLoad_seacr0.0120.0010.013
expandCigar0.0590.0030.064
findMaxPos0.0150.0020.018
fragLen_calcStranded0.4900.0050.498
fragLen_fromMacs2Xls0.0010.0010.001
getReadLength0.0160.0010.016
get_mapped_reads0.0030.0000.003
ggellipse0.2830.0040.290
harmonize_seqlengths0.0380.0050.042
make_clustering_matrix0.0300.0020.032
merge_clusters1.3130.0111.332
prepare_fetch_GRanges0.0140.0010.017
prepare_fetch_GRanges_names0.0360.0020.039
prepare_fetch_GRanges_width0.0090.0010.009
quantileGRangesWidth0.0010.0000.001
reorder_clusters_hclust0.7420.0090.762
reorder_clusters_manual0.4090.0040.418
reorder_clusters_stepdown1.1440.0081.174
reverse_clusters0.8140.0120.843
safeBrew0.0080.0010.009
split_cluster0.6840.0090.715
ssvAnnotateSubjectGRanges0.2820.0080.290
ssvConsensusIntervalSets0.1300.0070.142
ssvFactorizeMembTable0.0040.0010.006
ssvFeatureBars0.2570.0020.259
ssvFeatureBinaryHeatmap3.1250.0583.223
ssvFeatureEuler0.2620.0020.266
ssvFeaturePie0.2170.0030.224
ssvFeatureUpset1.0000.0081.012
ssvFeatureVenn0.4560.0040.460
ssvFetchBam1.8980.0311.975
ssvFetchBamPE0.6150.0140.641
ssvFetchBamPE.RNA0.5270.0240.584
ssvFetchBigwig0.4380.0080.455
ssvFetchGRanges0.2440.0030.250
ssvFetchSignal0.8290.0110.852
ssvMakeMembTable-methods0.1560.0060.165
ssvOverlapIntervalSets0.0780.0040.082
ssvSignalBandedQuantiles1.2090.0211.250
ssvSignalClustering0.9650.0150.991
ssvSignalHeatmap.ClusterBars2.2030.0402.282
ssvSignalHeatmap1.8980.0401.966
ssvSignalLineplot0.9240.0090.943
ssvSignalLineplotAgg0.3420.0040.347
ssvSignalScatterplot0.3660.0070.379
viewGRangesWinSample_dt0.3820.0050.390
viewGRangesWinSummary_dt0.3570.0040.363
within_clust_sort0.5910.0070.601