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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:sRACIPE.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings sRACIPE_2.3.2.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.23-bioc/meat/sRACIPE.Rcheck’
* using R Under development (unstable) (2026-03-20 r89666)
* using platform: aarch64-apple-darwin23
* R was compiled by
    Apple clang version 17.0.0 (clang-1700.3.19.1)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Tahoe 26.3.1
* using session charset: UTF-8
* current time: 2026-03-21 05:42:54 UTC
* using option ‘--no-vignettes’
* checking for file ‘sRACIPE/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘sRACIPE’ version ‘2.3.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘sRACIPE’ can be installed ... OK
* used C++ compiler: ‘Apple clang version 17.0.0 (clang-1700.6.4.2)’
* used SDK: ‘MacOSX26.2.sdk’
* checking C++ specification ... NOTE
  Obsolete C++11 standard request will be ignored
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License stub is invalid DCF.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
sracipeConvergeDist,RacipeSE: no visible global function definition for
  ‘polygon’
Undefined global functions or variables:
  polygon
Consider adding
  importFrom("graphics", "polygon")
to your NAMESPACE file.
* checking Rd files ... NOTE
checkRd: (-1) sracipeHeatmapSimilarity.Rd:31: Lost braces
    31 | If clusterCut is missing, hierarchical clustering using /code{ward.D2}
       |                                                              ^
checkRd: (-1) sracipeHeatmapSimilarity.Rd:32: Lost braces
    32 | and /code{distance  = (1-cor(x, method = "spear"))/2} will be used to 
       |          ^
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  RacipeSE-class.Rd: SummarizedExperiment
  RacipeSE.Rd: SummarizedExperiment
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... INFO
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                 user system elapsed
sracipeSimulate 10.04  0.131  10.567
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 5 NOTEs
See
  ‘/Users/biocbuild/bbs-3.23-bioc/meat/sRACIPE.Rcheck/00check.log’
for details.

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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL sRACIPE
###
##############################################################################
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.6/Resources/library’
* installing *source* package ‘sRACIPE’ ...
** this is package ‘sRACIPE’ version ‘2.3.2’
** using staged installation
** libs
specified C++11
using C++ compiler: ‘Apple clang version 17.0.0 (clang-1700.6.4.2)’
using SDK: ‘MacOSX26.2.sdk’
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c generateThresholds.cpp -o generateThresholds.o
generateThresholds.cpp:43:41: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension]
   43 |   size_t interactionsNumber[numberGene][interactionTypes];
      |                                         ^~~~~~~~~~~~~~~~
generateThresholds.cpp:43:41: note: read of non-const variable 'interactionTypes' is not allowed in a constant expression
generateThresholds.cpp:31:10: note: declared here
   31 |   size_t interactionTypes = static_cast<size_t>(hyperParameters[8]);
      |          ^
generateThresholds.cpp:43:29: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension]
   43 |   size_t interactionsNumber[numberGene][interactionTypes];
      |                             ^~~~~~~~~~
generateThresholds.cpp:43:29: note: read of non-const variable 'numberGene' is not allowed in a constant expression
generateThresholds.cpp:38:10: note: declared here
   38 |   size_t numberGene=geneInteraction.nrow();
      |          ^
2 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c header.cpp -o header.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c limitcycle.cpp -o limitcycle.o
limitcycle.cpp:33:20: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension]
   33 |     double fX2_arr[number_gene]; //fX2_arr saves fX values for degradation part
      |                    ^~~~~~~~~~~
limitcycle.cpp:33:20: note: function parameter 'number_gene' with unknown value cannot be used in a constant expression
limitcycle.cpp:21:26: note: declared here
   21 | void cal_fX_E(const int &number_gene,
      |                          ^
limitcycle.cpp:86:20: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension]
   86 | double exprxGeneH1[number_gene]; //array for temp gene expression values
      |                    ^~~~~~~~~~~
limitcycle.cpp:86:20: note: function parameter 'number_gene' with unknown value cannot be used in a constant expression
limitcycle.cpp:73:26: note: declared here
   73 | void cal_fX_R(const int &number_gene,
      |                          ^
limitcycle.cpp:87:20: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension]
   87 | double exprxGeneH2[number_gene]; //array for temp gene expression values
      |                    ^~~~~~~~~~~
limitcycle.cpp:87:20: note: function parameter 'number_gene' with unknown value cannot be used in a constant expression
limitcycle.cpp:73:26: note: declared here
   73 | void cal_fX_R(const int &number_gene,
      |                          ^
limitcycle.cpp:88:20: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension]
   88 | double exprxGeneH3[number_gene]; //array for temp gene expression values
      |                    ^~~~~~~~~~~
limitcycle.cpp:88:20: note: function parameter 'number_gene' with unknown value cannot be used in a constant expression
limitcycle.cpp:73:26: note: declared here
   73 | void cal_fX_R(const int &number_gene,
      |                          ^
limitcycle.cpp:89:20: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension]
   89 | double exprxGeneH4[number_gene]; //array for temp gene expression values
      |                    ^~~~~~~~~~~
limitcycle.cpp:89:20: note: function parameter 'number_gene' with unknown value cannot be used in a constant expression
limitcycle.cpp:73:26: note: declared here
   73 | void cal_fX_R(const int &number_gene,
      |                          ^
limitcycle.cpp:329:17: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension]
  329 |     int periodT[MaxPeriods]; //saves the periods
      |                 ^~~~~~~~~~
limitcycle.cpp:329:17: note: function parameter 'MaxPeriods' with unknown value cannot be used in a constant expression
limitcycle.cpp:316:24: note: declared here
  316 |             const int &MaxPeriods,
      |                        ^
limitcycle.cpp:327:9: warning: variable 'countSameMinDist' set but not used [-Wunused-but-set-variable]
  327 |     int countSameMinDist=0;
      |         ^
limitcycle.cpp:621:23: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension]
  621 |     int LC_period_arr[maxLCs];
      |                       ^~~~~~
limitcycle.cpp:621:23: note: function parameter 'maxLCs' with unknown value cannot be used in a constant expression
limitcycle.cpp:610:25: note: declared here
  610 |              const int &maxLCs,
      |                         ^
8 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c simulateGRC.cpp -o simulateGRC.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c steppers.cpp -o steppers.o
steppers.cpp:118:21: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension]
  118 |   double exprxGeneH[numberGene]; //array for temp gene expression values
      |                     ^~~~~~~~~~
steppers.cpp:118:21: note: function parameter 'numberGene' with unknown value cannot be used in a constant expression
steppers.cpp:93:25: note: declared here
   93 |              const int &numberGene,
      |                         ^
steppers.cpp:245:21: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension]
  245 |   double exprxGeneH[numberGene]; //array for temp gene expression values
      |                     ^~~~~~~~~~
steppers.cpp:245:21: note: function parameter 'numberGene' with unknown value cannot be used in a constant expression
steppers.cpp:219:25: note: declared here
  219 |              const int &numberGene,
      |                         ^
steppers.cpp:246:20: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension]
  246 |   double currNoise[numberGene]; //array for temp gene expression values
      |                    ^~~~~~~~~~
steppers.cpp:246:20: note: function parameter 'numberGene' with unknown value cannot be used in a constant expression
steppers.cpp:219:25: note: declared here
  219 |              const int &numberGene,
      |                         ^
steppers.cpp:381:20: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension]
  381 | double exprxGeneH1[numberGene]; //array for temp gene expression values
      |                    ^~~~~~~~~~
steppers.cpp:381:20: note: function parameter 'numberGene' with unknown value cannot be used in a constant expression
steppers.cpp:359:25: note: declared here
  359 |              const int &numberGene,
      |                         ^
steppers.cpp:382:20: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension]
  382 | double exprxGeneH2[numberGene]; //array for temp gene expression values
      |                    ^~~~~~~~~~
steppers.cpp:382:20: note: function parameter 'numberGene' with unknown value cannot be used in a constant expression
steppers.cpp:359:25: note: declared here
  359 |              const int &numberGene,
      |                         ^
steppers.cpp:383:20: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension]
  383 | double exprxGeneH3[numberGene]; //array for temp gene expression values
      |                    ^~~~~~~~~~
steppers.cpp:383:20: note: function parameter 'numberGene' with unknown value cannot be used in a constant expression
steppers.cpp:359:25: note: declared here
  359 |              const int &numberGene,
      |                         ^
steppers.cpp:384:20: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension]
  384 | double exprxGeneH4[numberGene]; //array for temp gene expression values
      |                    ^~~~~~~~~~
steppers.cpp:384:20: note: function parameter 'numberGene' with unknown value cannot be used in a constant expression
steppers.cpp:359:25: note: declared here
  359 |              const int &numberGene,
      |                         ^
steppers.cpp:669:21: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension]
  669 |   double exprxGeneH[numberGene]; //array for temp gene expression values
      |                     ^~~~~~~~~~
steppers.cpp:669:21: note: function parameter 'numberGene' with unknown value cannot be used in a constant expression
steppers.cpp:648:26: note: declared here
  648 |               const int &numberGene,
      |                          ^
steppers.cpp:670:22: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension]
  670 |   double exprxGeneH1[numberGene]; //array for temp gene expression values
      |                      ^~~~~~~~~~
steppers.cpp:670:22: note: function parameter 'numberGene' with unknown value cannot be used in a constant expression
steppers.cpp:648:26: note: declared here
  648 |               const int &numberGene,
      |                          ^
steppers.cpp:671:22: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension]
  671 |   double exprxGeneH2[numberGene]; //array for temp gene expression values
      |                      ^~~~~~~~~~
steppers.cpp:671:22: note: function parameter 'numberGene' with unknown value cannot be used in a constant expression
steppers.cpp:648:26: note: declared here
  648 |               const int &numberGene,
      |                          ^
steppers.cpp:672:22: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension]
  672 |   double exprxGeneH3[numberGene]; //array for temp gene expression values
      |                      ^~~~~~~~~~
steppers.cpp:672:22: note: function parameter 'numberGene' with unknown value cannot be used in a constant expression
steppers.cpp:648:26: note: declared here
  648 |               const int &numberGene,
      |                          ^
steppers.cpp:673:22: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension]
  673 |   double exprxGeneH4[numberGene]; //array for temp gene expression values
      |                      ^~~~~~~~~~
steppers.cpp:673:22: note: function parameter 'numberGene' with unknown value cannot be used in a constant expression
steppers.cpp:648:26: note: declared here
  648 |               const int &numberGene,
      |                          ^
steppers.cpp:674:22: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension]
  674 |   double exprxGeneH5[numberGene]; //array for temp gene expression values
      |                      ^~~~~~~~~~
steppers.cpp:674:22: note: function parameter 'numberGene' with unknown value cannot be used in a constant expression
steppers.cpp:648:26: note: declared here
  648 |               const int &numberGene,
      |                          ^
steppers.cpp:675:22: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension]
  675 |   double exprxGeneH6[numberGene]; //array for temp gene expression values
      |                      ^~~~~~~~~~
steppers.cpp:675:22: note: function parameter 'numberGene' with unknown value cannot be used in a constant expression
steppers.cpp:648:26: note: declared here
  648 |               const int &numberGene,
      |                          ^
steppers.cpp:676:22: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension]
  676 |   double exprxGeneH7[numberGene]; //array for temp gene expression values
      |                      ^~~~~~~~~~
steppers.cpp:676:22: note: function parameter 'numberGene' with unknown value cannot be used in a constant expression
steppers.cpp:648:26: note: declared here
  648 |               const int &numberGene,
      |                          ^
15 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c steppersConv.cpp -o steppersConv.o
steppersConv.cpp:30:21: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension]
   30 |   double exprxGeneH[numberGene]; //array for temp gene expression values
      |                     ^~~~~~~~~~
steppersConv.cpp:30:21: note: function parameter 'numberGene' with unknown value cannot be used in a constant expression
steppersConv.cpp:10:25: note: declared here
   10 |              const int &numberGene,
      |                         ^
steppersConv.cpp:37:10: warning: variable 'i' set but not used [-Wunused-but-set-variable]
   37 |   double i=0.0;
      |          ^
steppersConv.cpp:156:20: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension]
  156 | double exprxGeneH1[numberGene]; //array for temp gene expression values
      |                    ^~~~~~~~~~
steppersConv.cpp:156:20: note: function parameter 'numberGene' with unknown value cannot be used in a constant expression
steppersConv.cpp:136:25: note: declared here
  136 |              const int &numberGene,
      |                         ^
steppersConv.cpp:157:20: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension]
  157 | double exprxGeneH2[numberGene]; //array for temp gene expression values
      |                    ^~~~~~~~~~
steppersConv.cpp:157:20: note: function parameter 'numberGene' with unknown value cannot be used in a constant expression
steppersConv.cpp:136:25: note: declared here
  136 |              const int &numberGene,
      |                         ^
steppersConv.cpp:158:20: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension]
  158 | double exprxGeneH3[numberGene]; //array for temp gene expression values
      |                    ^~~~~~~~~~
steppersConv.cpp:158:20: note: function parameter 'numberGene' with unknown value cannot be used in a constant expression
steppersConv.cpp:136:25: note: declared here
  136 |              const int &numberGene,
      |                         ^
steppersConv.cpp:159:20: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension]
  159 | double exprxGeneH4[numberGene]; //array for temp gene expression values
      |                    ^~~~~~~~~~
steppersConv.cpp:159:20: note: function parameter 'numberGene' with unknown value cannot be used in a constant expression
steppersConv.cpp:136:25: note: declared here
  136 |              const int &numberGene,
      |                         ^
steppersConv.cpp:170:8: warning: variable 'i' set but not used [-Wunused-but-set-variable]
  170 | double i=0.0;
      |        ^
steppersConv.cpp:396:21: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension]
  396 |   double exprxGeneH[numberGene]; //array for temp gene expression values
      |                     ^~~~~~~~~~
steppersConv.cpp:396:21: note: function parameter 'numberGene' with unknown value cannot be used in a constant expression
steppersConv.cpp:376:26: note: declared here
  376 |               const int &numberGene,
      |                          ^
steppersConv.cpp:397:22: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension]
  397 |   double exprxGeneH1[numberGene]; //array for temp gene expression values
      |                      ^~~~~~~~~~
steppersConv.cpp:397:22: note: function parameter 'numberGene' with unknown value cannot be used in a constant expression
steppersConv.cpp:376:26: note: declared here
  376 |               const int &numberGene,
      |                          ^
steppersConv.cpp:398:22: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension]
  398 |   double exprxGeneH2[numberGene]; //array for temp gene expression values
      |                      ^~~~~~~~~~
steppersConv.cpp:398:22: note: function parameter 'numberGene' with unknown value cannot be used in a constant expression
steppersConv.cpp:376:26: note: declared here
  376 |               const int &numberGene,
      |                          ^
steppersConv.cpp:399:22: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension]
  399 |   double exprxGeneH3[numberGene]; //array for temp gene expression values
      |                      ^~~~~~~~~~
steppersConv.cpp:399:22: note: function parameter 'numberGene' with unknown value cannot be used in a constant expression
steppersConv.cpp:376:26: note: declared here
  376 |               const int &numberGene,
      |                          ^
steppersConv.cpp:400:22: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension]
  400 |   double exprxGeneH4[numberGene]; //array for temp gene expression values
      |                      ^~~~~~~~~~
steppersConv.cpp:400:22: note: function parameter 'numberGene' with unknown value cannot be used in a constant expression
steppersConv.cpp:376:26: note: declared here
  376 |               const int &numberGene,
      |                          ^
steppersConv.cpp:401:22: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension]
  401 |   double exprxGeneH5[numberGene]; //array for temp gene expression values
      |                      ^~~~~~~~~~
steppersConv.cpp:401:22: note: function parameter 'numberGene' with unknown value cannot be used in a constant expression
steppersConv.cpp:376:26: note: declared here
  376 |               const int &numberGene,
      |                          ^
steppersConv.cpp:402:22: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension]
  402 |   double exprxGeneH6[numberGene]; //array for temp gene expression values
      |                      ^~~~~~~~~~
steppersConv.cpp:402:22: note: function parameter 'numberGene' with unknown value cannot be used in a constant expression
steppersConv.cpp:376:26: note: declared here
  376 |               const int &numberGene,
      |                          ^
steppersConv.cpp:403:22: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension]
  403 |   double exprxGeneH7[numberGene]; //array for temp gene expression values
      |                      ^~~~~~~~~~
steppersConv.cpp:403:22: note: function parameter 'numberGene' with unknown value cannot be used in a constant expression
steppersConv.cpp:376:26: note: declared here
  376 |               const int &numberGene,
      |                          ^
steppersConv.cpp:422:10: warning: variable 'i' set but not used [-Wunused-but-set-variable]
  422 |   double i=0.0;
      |          ^
16 warnings generated.
clang++ -arch arm64 -std=gnu++20 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o sRACIPE.so RcppExports.o generateThresholds.o header.o limitcycle.o simulateGRC.o steppers.o steppersConv.o -F/Library/Frameworks/R.framework/.. -framework R
installing to /Library/Frameworks/R.framework/Versions/4.6/Resources/library/00LOCK-sRACIPE/00new/sRACIPE/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (sRACIPE)