| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-01-10 11:34 -0500 (Sat, 10 Jan 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2025-12-22 r89219) -- "Unsuffered Consequences" | 4818 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences" | 4594 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1687/2332 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| ramr 1.19.0 (landing page) Oleksii Nikolaienko
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | ERROR | ERROR | skipped | skipped | |||||||||
|
To the developers/maintainers of the ramr package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ramr.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: ramr |
| Version: 1.19.0 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data ramr |
| StartedAt: 2026-01-09 19:26:32 -0500 (Fri, 09 Jan 2026) |
| EndedAt: 2026-01-09 19:27:18 -0500 (Fri, 09 Jan 2026) |
| EllapsedTime: 46.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data ramr
###
##############################################################################
##############################################################################
* checking for file ‘ramr/DESCRIPTION’ ... OK
* preparing ‘ramr’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
-----------------------------------
* installing *source* package ‘ramr’ ...
** this is package ‘ramr’ version ‘1.19.0’
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
using C++20
g++ -std=gnu++20 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/Rcpp/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -Werror=format-security -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++20 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/Rcpp/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -Werror=format-security -c rcpp_compute_logp.cpp -o rcpp_compute_logp.o
g++ -std=gnu++20 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/Rcpp/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -Werror=format-security -c rcpp_compute_xiqr.cpp -o rcpp_compute_xiqr.o
g++ -std=gnu++20 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/Rcpp/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -Werror=format-security -c rcpp_create_granges.cpp -o rcpp_create_granges.o
g++ -std=gnu++20 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/Rcpp/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -Werror=format-security -c rcpp_filter_threshold.cpp -o rcpp_filter_threshold.o
g++ -std=gnu++20 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/Rcpp/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -Werror=format-security -c rcpp_fit_beta.cpp -o rcpp_fit_beta.o
g++ -std=gnu++20 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/Rcpp/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -Werror=format-security -c rcpp_fit_betabinom.cpp -o rcpp_fit_betabinom.o
g++ -std=gnu++20 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/Rcpp/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -Werror=format-security -c rcpp_fit_binom.cpp -o rcpp_fit_binom.o
g++ -std=gnu++20 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/Rcpp/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -Werror=format-security -c rcpp_generate_random_values.cpp -o rcpp_generate_random_values.o
g++ -std=gnu++20 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/Rcpp/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -Werror=format-security -c rcpp_get_iqr.cpp -o rcpp_get_iqr.o
g++ -std=gnu++20 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/Rcpp/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -Werror=format-security -c rcpp_get_meanvar.cpp -o rcpp_get_meanvar.o
g++ -std=gnu++20 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/Rcpp/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -Werror=format-security -c rcpp_helper_functions.cpp -o rcpp_helper_functions.o
g++ -std=gnu++20 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/Rcpp/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -Werror=format-security -c rcpp_prepare_data.cpp -o rcpp_prepare_data.o
In file included from /home/biocbuild/bbs-3.23-bioc/R/site-library/Rcpp/include/Rcpp.h:58,
from rcpp_prepare_data.cpp:4:
/home/biocbuild/bbs-3.23-bioc/R/site-library/Rcpp/include/Rcpp/DataFrame.h: In instantiation of ‘int Rcpp::DataFrame_Impl<StoragePolicy>::nrow() const [with StoragePolicy = Rcpp::PreserveStorage]’:
rcpp_prepare_data.cpp:37:33: required from ‘Rcpp::List rcpp_prepare_data(Rcpp::IntegerVector&, Rcpp::IntegerVector&, Rcpp::IntegerVector&, Rcpp::IntegerVector&, Rcpp::DataFrame&, Rcpp::DataFrame&, double, double, Rcpp::IntegerVector&) [with int transform = 0; Rcpp::List = Rcpp::Vector<19>; Rcpp::IntegerVector = Rcpp::Vector<13>; Rcpp::DataFrame = Rcpp::DataFrame_Impl<Rcpp::PreserveStorage>]’
rcpp_prepare_data.cpp:171:30: required from here
/home/biocbuild/bbs-3.23-bioc/R/site-library/Rcpp/include/Rcpp/DataFrame.h:64:26: error: ‘R_nrow’ was not declared in this scope; did you mean ‘nrow’?
64 | return R_nrow( Parent::get__() );
| ~~~~~~^~~~~~~~~~~~~~~~~~~
| nrow
make: *** [/home/biocbuild/bbs-3.23-bioc/R/etc/Makeconf:209: rcpp_prepare_data.o] Error 1
ERROR: compilation failed for package ‘ramr’
* removing ‘/tmp/RtmpIjZEDM/Rinst1cc9d07dc05f31/ramr’
-----------------------------------
ERROR: package installation failed