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This page was generated on 2025-11-13 11:32 -0500 (Thu, 13 Nov 2025).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson3macOS 13.7.7 Venturaarm64R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences" 4013
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1601/2325HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
podkat 1.43.0  (landing page)
Ulrich Bodenhofer
Snapshot Date: 2025-11-12 13:40 -0500 (Wed, 12 Nov 2025)
git_url: https://git.bioconductor.org/packages/podkat
git_branch: devel
git_last_commit: d216a17
git_last_commit_date: 2025-10-29 10:24:59 -0500 (Wed, 29 Oct 2025)
kjohnson3macOS 13.7.7 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for podkat on kjohnson3

To the developers/maintainers of the podkat package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/podkat.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: podkat
Version: 1.43.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data podkat
StartedAt: 2025-11-12 16:58:05 -0500 (Wed, 12 Nov 2025)
EndedAt: 2025-11-12 16:58:58 -0500 (Wed, 12 Nov 2025)
EllapsedTime: 52.6 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data podkat
###
##############################################################################
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* checking for file ‘podkat/DESCRIPTION’ ... OK
* preparing ‘podkat’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘podkat.Rnw’ using knitr

Quitting from podkat.Rnw:1530-1544 [UnmaskedRegionsSexHg38]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'GWASTools'
---
Backtrace:
    x
 1. \-base::library(GWASTools)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'podkat.Rnw' failed with diagnostics:
there is no package called 'GWASTools'
--- failed re-building ‘podkat.Rnw’

SUMMARY: processing the following file failed:
  ‘podkat.Rnw’

Error: Vignette re-building failed.
Execution halted