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This page was generated on 2025-11-13 11:32 -0500 (Thu, 13 Nov 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences" | 4013 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1570/2325 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| philr 1.37.0 (landing page) Justin Silverman
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | ||||||||
|
To the developers/maintainers of the philr package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/philr.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: philr |
| Version: 1.37.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data philr |
| StartedAt: 2025-11-12 16:56:34 -0500 (Wed, 12 Nov 2025) |
| EndedAt: 2025-11-12 16:56:46 -0500 (Wed, 12 Nov 2025) |
| EllapsedTime: 12.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data philr
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* checking for file ‘philr/DESCRIPTION’ ... OK
* preparing ‘philr’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘philr-intro.Rmd’ using rmarkdown
Quitting from philr-intro.Rmd:242-248 [unnamed-chunk-12]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! 'phyloseq' package not found. Please install the 'phyloseq' package to use this function.
---
Backtrace:
▆
1. ├─mia::convertToPhyloseq(tse, assay.type = "counts.shifted")
2. └─mia::convertToPhyloseq(tse, assay.type = "counts.shifted")
3. └─mia (local) .local(x, ...)
4. ├─methods::callNextMethod()
5. └─mia (local) .nextMethod(x = x, ... = ...)
6. └─mia (local) .local(x, ...)
7. └─mia:::.require_package("phyloseq")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'philr-intro.Rmd' failed with diagnostics:
'phyloseq' package not found. Please install the 'phyloseq' package to use this function.
--- failed re-building ‘philr-intro.Rmd’
SUMMARY: processing the following file failed:
‘philr-intro.Rmd’
Error: Vignette re-building failed.
Execution halted