Back to Build/check report for BioC 3.23:   simplified   long
ABCDEFGHIJKLMNO[P]QRSTUVWXYZ

This page was generated on 2025-11-13 11:32 -0500 (Thu, 13 Nov 2025).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson3macOS 13.7.7 Venturaarm64R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences" 4013
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1559/2325HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
periodicDNA 1.21.0  (landing page)
Jacques Serizay
Snapshot Date: 2025-11-12 13:40 -0500 (Wed, 12 Nov 2025)
git_url: https://git.bioconductor.org/packages/periodicDNA
git_branch: devel
git_last_commit: 5bd1078
git_last_commit_date: 2025-10-29 11:01:58 -0500 (Wed, 29 Oct 2025)
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    WARNINGS    OK  NO, package depends on 'GenomicRanges' which is only available as a source package that needs compilation


BUILD BIN results for periodicDNA on kjohnson3

To the developers/maintainers of the periodicDNA package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/periodicDNA.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: periodicDNA
Version: 1.21.0
Command: rm -rf periodicDNA.buildbin-libdir && mkdir periodicDNA.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh periodicDNA_1.21.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R periodicDNA.buildbin-libdir
StartedAt: 2025-11-12 21:06:04 -0500 (Wed, 12 Nov 2025)
EndedAt: 2025-11-12 21:06:22 -0500 (Wed, 12 Nov 2025)
EllapsedTime: 17.4 seconds
RetCode: 0
Status:   OK  
PackageFile: periodicDNA_1.21.0.tgz
PackageFileSize: 3.059 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf periodicDNA.buildbin-libdir && mkdir periodicDNA.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh periodicDNA_1.21.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R periodicDNA.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=periodicDNA.buildbin-libdir periodicDNA_1.21.0.tar.gz'
>>>>>>> 

* installing *source* package ‘periodicDNA’ ...
** this is package ‘periodicDNA’ version ‘1.21.0’
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import ‘GenomicRanges::subtract’ by ‘magrittr::subtract’ when loading ‘periodicDNA’
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import ‘GenomicRanges::subtract’ by ‘magrittr::subtract’ when loading ‘periodicDNA’
** testing if installed package can be loaded from final location
Warning: replacing previous import ‘GenomicRanges::subtract’ by ‘magrittr::subtract’ when loading ‘periodicDNA’
** testing if installed package keeps a record of temporary installation path
* DONE (periodicDNA)